Run ID: SRR023493
Sample name:
Date: 02-04-2023 14:13:34
Number of reads: 398413
Percentage reads mapped: 97.61
Strain: lineage4
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9060 | p.Ala587Pro | missense_variant | 0.67 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 490782 | c.-1G>A | upstream_gene_variant | 0.22 |
fgd1 | 491591 | p.Lys270Met | missense_variant | 1.0 |
rpoB | 760115 | c.309C>T | synonymous_variant | 1.0 |
rpoC | 763834 | p.Met155Ile | missense_variant | 0.4 |
rpoC | 764558 | p.Arg397Ser | missense_variant | 1.0 |
mmpL5 | 777817 | p.Val222Ile | missense_variant | 0.4 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rpsL | 781738 | p.Gln60Pro | missense_variant | 0.17 |
rplC | 801369 | c.561C>A | synonymous_variant | 0.17 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
inhA | 1674497 | p.Pro99Gln | missense_variant | 0.2 |
rpsA | 1834683 | p.Ala381Asp | missense_variant | 0.4 |
katG | 2156436 | c.-325C>A | upstream_gene_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518076 | c.-39C>T | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
Rv3083 | 3448366 | c.-138C>A | upstream_gene_variant | 0.67 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fbiA | 3640379 | c.-164T>C | upstream_gene_variant | 1.0 |
clpC1 | 4038727 | p.Thr660Ser | missense_variant | 0.25 |
embB | 4248470 | p.Gly653Ser | missense_variant | 0.5 |
aftB | 4268083 | p.Gln252* | stop_gained | 0.33 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |