Rv3261 - c.-164T>C


Drug resistance types
164 Sensitive 18 RR-TB 12 HR-TB 2 MDR-TB 0 Pre-XDR-TB 0 XDR-TB 4 Other
lineage Counts
lineage Count
lineage4.1.2.1 161
lineage7 1
lineage4.1.2.1;lineage4.9 17
lineage1.1.1 2
lineage1.1.2 5
lineage2.2.1 2
lineage4.3.4.2.1 10
lineage4.2.2.2 1
lineage4.5 1
spoligotype Counts
spoligotype Count
None 200
Geographic prevalence
Country level data for this variant is available for 16 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR023462 Sensitive lineage4.1.2.1 None
SRR10033114 Sensitive lineage4.1.2.1 None
SRR1643049 RR-TB lineage4.1.2.1 None
ERR1227512 Sensitive lineage4.1.2.1 None
SRR1223192 Sensitive lineage4.1.2.1 None
SRR1214493 Sensitive lineage4.1.2.1 None
SRR023458 Sensitive lineage4.1.2.1 None
SRR121591 Sensitive lineage4.1.2.1 None
SRR25666656 Sensitive lineage4.1.2.1 None
ERR1971859 Other lineage7 et
SRR1223523 Sensitive lineage4.1.2.1 None
SRR7517711 Sensitive lineage4.1.2.1 ch
SRR21859819 Sensitive lineage4.1.2.1 None
SRR121585 Sensitive lineage4.1.2.1 None
SRR121587 Sensitive lineage4.1.2.1 None
SRR023427 Sensitive lineage4.1.2.1;lineage4.9 None
SRR1232671 Sensitive lineage4.1.2.1 None
SRR1642989 Sensitive lineage4.1.2.1 None
SRR1216233 Sensitive lineage4.1.2.1;lineage4.9 None
SRR25666630 Sensitive lineage4.1.2.1 None
SRR023445 Sensitive lineage4.1.2.1;lineage4.9 None
ERR768007 Sensitive lineage1.1.1 th
SRR1642873 Sensitive lineage4.1.2.1 None
SRR1233011 Sensitive lineage4.1.2.1 None
SRR25666608 Sensitive lineage4.1.2.1 None
SRR023474 Sensitive lineage4.1.2.1 None
SRR25666659 Sensitive lineage4.1.2.1 None
SRR15217978 Sensitive lineage4.1.2.1 None
SRR1642991 RR-TB lineage4.1.2.1 None
SRR21859820 Sensitive lineage4.1.2.1 None
ERR4797552 Other lineage1.1.2 in
SRR023467 Sensitive lineage4.1.2.1 None
SRR25666613 Sensitive lineage4.1.2.1 None
SRR023469 Sensitive lineage4.1.2.1 None
SRR26442320 Sensitive lineage4.1.2.1 None
SRR10033113 Sensitive lineage4.1.2.1 None
SRR25666604 Sensitive lineage4.1.2.1 None
SRR023473 Sensitive lineage4.1.2.1 None
SRR10033115 Sensitive lineage4.1.2.1 None
SRR25666650 Sensitive lineage4.1.2.1 None
SRR1232692 Sensitive lineage4.1.2.1;lineage4.9 None
SRR1218187 Sensitive lineage4.1.2.1 None
SRR023466 Sensitive lineage4.1.2.1 None
SRR21689563 Sensitive lineage2.2.1 None
SRR1214330 Sensitive lineage4.1.2.1 None
SRR21859818 HR-TB lineage4.1.2.1 None
SRR1643051 RR-TB lineage4.1.2.1 None
SRR25666654 Sensitive lineage4.1.2.1 None
SRR15014639 MDR-TB lineage1.1.2 None
SRR1222390 Sensitive lineage4.1.2.1 None
SRR25666647 Sensitive lineage4.1.2.1 None
SRR10033121 Sensitive lineage4.1.2.1 None
SRR1642939 Sensitive lineage4.1.2.1 None
SRR25666611 Sensitive lineage4.1.2.1 None
SRR1642940 HR-TB lineage4.1.2.1 None
ERR182037 HR-TB lineage4.3.4.2.1 mw
SRR25666661 Sensitive lineage4.1.2.1 None
SRR1230667 Sensitive lineage4.1.2.1;lineage4.9 None
SRR25666649 Sensitive lineage4.1.2.1 None
SRR1221665 Sensitive lineage4.1.2.1;lineage4.9 None
SRR1642937 RR-TB lineage4.1.2.1 None
SRR11040617 Sensitive lineage4.1.2.1 None
SRR25666652 Sensitive lineage4.1.2.1 None
SRR1223208 Sensitive lineage4.1.2.1 None
SRR11040618 Sensitive lineage4.1.2.1 None
SRR8588266 Sensitive lineage4.1.2.1 None
SRR1214019 Sensitive lineage4.1.2.1 None
SRR25666635 Sensitive lineage4.1.2.1 None
SRR25666645 Sensitive lineage4.1.2.1 None
ERR473290 HR-TB lineage4.3.4.2.1 None
SRR1643050 RR-TB lineage4.1.2.1 None
SRR1230888 Sensitive lineage4.1.2.1;lineage4.9 None
SRR1230502 Sensitive lineage4.1.2.1 None
SRR25666636 Sensitive lineage4.1.2.1 None
SRR25666607 Sensitive lineage4.1.2.1 None
SRR023464 Sensitive lineage4.1.2.1 None
SRR25666638 Sensitive lineage4.1.2.1 None
SRR25666606 Sensitive lineage4.1.2.1 None
ERR1227517 RR-TB lineage4.1.2.1 None
SRR1222565 Sensitive lineage4.1.2.1;lineage4.9 None
SRR1233649 Sensitive lineage4.1.2.1;lineage4.9 None
SRR1214982 Sensitive lineage4.1.2.1 None
SRR10033112 Sensitive lineage4.1.2.1 None
ERR4798448 Other lineage1.1.2 in
SRR1218963 Sensitive lineage4.1.2.1 None
SRR25666658 Sensitive lineage4.1.2.1 None
SRR1223347 Sensitive lineage4.1.2.1 None
SRR023468 Sensitive lineage4.1.2.1 None
SRR25666642 Sensitive lineage4.1.2.1 None
SRR25666595 Sensitive lineage4.1.2.1 None
SRR023461 Sensitive lineage4.1.2.1 None
SRR25666609 Sensitive lineage4.1.2.1 None
SRR25666660 Sensitive lineage4.1.2.1 None
SRR26442323 Sensitive lineage4.1.2.1 None
SRR023494 Sensitive lineage4.1.2.1 None
SRR12882473 Sensitive lineage1.1.2 None
SRR25666602 Sensitive lineage4.1.2.1 None
ERR1227519 RR-TB lineage4.1.2.1 None
ERR473328 HR-TB lineage4.3.4.2.1 None
SRR121584 Sensitive lineage4.1.2.1 None
ERR1227513 Sensitive lineage4.1.2.1 None
SRR25666643 Sensitive lineage4.1.2.1 None
ERR473308 HR-TB lineage4.3.4.2.1 None
SRR1220027 Sensitive lineage4.1.2.1 None
SRR1220028 Sensitive lineage4.1.2.1 None
SRR25666651 Sensitive lineage4.1.2.1 None
ERR718539 Sensitive lineage1.1.1 th
SRR023460 Sensitive lineage4.1.2.1;lineage4.9 None
SRR1221163 Sensitive lineage4.1.2.1 None
SRR1230900 Sensitive lineage4.1.2.1 None
SRR1231644 Sensitive lineage4.1.2.1 None
SRR25666640 Sensitive lineage4.1.2.1 None
SRR25666655 Sensitive lineage4.1.2.1 None
ERR1227521 RR-TB lineage4.1.2.1 None
SRR1643047 RR-TB lineage4.1.2.1 None
SRR10033116 Sensitive lineage4.1.2.1 None
SRR26442319 Sensitive lineage4.1.2.1 None
ERR4798737 Other lineage1.1.2 in
SRR25666657 Sensitive lineage4.1.2.1 None
SRR1221048 Sensitive lineage4.1.2.1 None
SRR1219101 Sensitive lineage4.1.2.1;lineage4.9 None
SRR1231407 Sensitive lineage4.1.2.1 None
SRR1642938 RR-TB lineage4.1.2.1 None
SRR1011525 Sensitive lineage4.1.2.1 None
SRR10033117 Sensitive lineage4.1.2.1 None
SRR1231639 Sensitive lineage4.1.2.1 None
SRR1232792 Sensitive lineage4.1.2.1 None
ERR245718 HR-TB lineage4.3.4.2.1 mw
SRR25666648 Sensitive lineage4.1.2.1 None
SRR1220015 Sensitive lineage4.1.2.1 None
SRR15217977 Sensitive lineage4.1.2.1 None
SRR25666646 Sensitive lineage4.1.2.1 None
ERR1227516 RR-TB lineage4.1.2.1 None
SRR1643048 RR-TB lineage4.1.2.1 None
SRR023472 Sensitive lineage4.1.2.1 None
SRR1219064 Sensitive lineage4.1.2.1 None
SRR023444 Sensitive lineage4.1.2.1;lineage4.9 None
SRR15217979 Sensitive lineage4.1.2.1 None
ERR1227515 RR-TB lineage4.1.2.1 None
SRR25666639 Sensitive lineage4.1.2.1 None
ERR1227514 RR-TB lineage4.1.2.1 None
SRR1214742 Sensitive lineage4.1.2.1;lineage4.9 None
SRR023463 Sensitive lineage4.1.2.1 None
SRR23080332 Sensitive lineage4.1.2.1 None
SRR032851 Sensitive lineage4.1.2.1 None
SRR25666615 Sensitive lineage4.1.2.1 None
SRR25666619 Sensitive lineage4.1.2.1 None
SRR023465 Sensitive lineage4.1.2.1 None
SRR25666600 Sensitive lineage4.1.2.1 None
SRR25666614 Sensitive lineage4.1.2.1 None
ERR181934 HR-TB lineage4.3.4.2.1 mw
SRR1230911 Sensitive lineage4.1.2.1 None
SRR21859821 Sensitive lineage4.1.2.1 None
SRR1232518 Sensitive lineage4.1.2.1;lineage4.9 None
SRR1231817 Sensitive lineage4.1.2.1 None
SRR1232984 Sensitive lineage4.1.2.1 None
SRR25666644 Sensitive lineage4.1.2.1 None
ERR176696 HR-TB lineage4.3.4.2.1 mw
SRR023471 Sensitive lineage4.1.2.1 None
SRR25666653 Sensitive lineage4.1.2.1 None
SRR10033120 Sensitive lineage4.1.2.1 None
SRR1230529 Sensitive lineage4.1.2.1 None
SRR1232578 Sensitive lineage4.1.2.1;lineage4.9 None
SRR023470 Sensitive lineage4.1.2.1 None
SRR25666603 Sensitive lineage4.1.2.1 None
ERR1227518 RR-TB lineage4.1.2.1 None
SRR1222244 Sensitive lineage4.1.2.1 None
SRR1214563 Sensitive lineage4.1.2.1;lineage4.9 None
ERR181762 HR-TB lineage4.3.4.2.1 mw
SRR1019195 Sensitive lineage4.1.2.1 None
SRR26442321 Sensitive lineage4.1.2.1 None
ERR190393 HR-TB lineage4.3.4.2.1 mw
SRR1643046 RR-TB lineage4.1.2.1 None
SRR121583 Sensitive lineage4.1.2.1 None
SRR1643010 RR-TB lineage4.1.2.1 None
SRR1218208 Sensitive lineage4.1.2.1 None
SRR1225689 Sensitive lineage4.1.2.1 None
SRR1232447 Sensitive lineage4.1.2.1;lineage4.9 None
ERR3275981 Sensitive lineage2.2.1 nl
SRR25666612 Sensitive lineage4.1.2.1 None
ERR1227520 RR-TB lineage4.1.2.1 None
SRR25666605 Sensitive lineage4.1.2.1 None
SRR25666601 Sensitive lineage4.1.2.1 None
SRR1230626 Sensitive lineage4.1.2.1 None
SRR185871 Sensitive lineage4.1.2.1 None
SRR849485 Sensitive lineage4.1.2.1 None
SRR1231267 Sensitive lineage4.1.2.1 None
ERR245733 HR-TB lineage4.3.4.2.1 mw
SRR26442322 Sensitive lineage4.1.2.1 None
SRR1221510 Sensitive lineage4.1.2.1 None
SRR25666610 Sensitive lineage4.1.2.1 None
SRR157506 Sensitive lineage4.1.2.1 None
ERR4796792 MDR-TB lineage4.2.2.2 in
SRR1222344 Sensitive lineage4.1.2.1 None
SRR25666637 Sensitive lineage4.1.2.1 None
SRR24083712 Sensitive lineage4.1.2.1 None
SRR121586 Sensitive lineage4.1.2.1 None
SRR11040619 Sensitive lineage4.1.2.1 None
ERR11044650 Sensitive lineage4.5 None
SRR17658000 Sensitive lineage4.1.2.1 None