Rv3261 - c.-164T>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
168 Sensitive
18 RR-TB
13 HR-TB
2 MDR-TB
0 Pre-XDR-TB
0 XDR-TB
3 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1.2.1;lineage4.9 | 18 |
| lineage4.1.2.1 | 162 |
| lineage1.1.2 | 5 |
| lineage4.3.4.2.1 | 10 |
| lineage2.2.1 | 2 |
| lineage7 | 1 |
| lineage4.5 | 2 |
| lineage1.2.2.2 | 1 |
| lineage1.1.1 | 2 |
| lineage4.2.2.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 204 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1222565 | Sensitive | lineage4.1.2.1;lineage4.9 | None | SRR1225689 | Sensitive | lineage4.1.2.1 | None | SRR25666614 | Sensitive | lineage4.1.2.1 | None | SRR1230529 | Sensitive | lineage4.1.2.1 | None | SRR25666659 | Sensitive | lineage4.1.2.1 | None | SRR1642873 | Sensitive | lineage4.1.2.1 | None | SRR023466 | Sensitive | lineage4.1.2.1 | None | SRR023470 | Sensitive | lineage4.1.2.1 | None | SRR21859819 | Sensitive | lineage4.1.2.1 | None | SRR1230900 | Sensitive | lineage4.1.2.1 | None | ERR4797552 | Other | lineage1.1.2 | in | SRR023468 | Sensitive | lineage4.1.2.1 | None | SRR25666658 | Sensitive | lineage4.1.2.1 | None | SRR25666613 | Sensitive | lineage4.1.2.1 | None | SRR25666642 | Sensitive | lineage4.1.2.1 | None | ERR1227514 | RR-TB | lineage4.1.2.1 | None | ERR473328 | HR-TB | lineage4.3.4.2.1 | None | SRR121584 | Sensitive | lineage4.1.2.1 | None | ERR3275981 | Sensitive | lineage2.2.1 | nl | SRR25666653 | Sensitive | lineage4.1.2.1 | None | SRR25666643 | Sensitive | lineage4.1.2.1 | None | ERR473308 | HR-TB | lineage4.3.4.2.1 | None | SRR1223523 | Sensitive | lineage4.1.2.1 | None | SRR1221163 | Sensitive | lineage4.1.2.1 | None | SRR25666603 | Sensitive | lineage4.1.2.1 | None | SRR21859818 | HR-TB | lineage4.1.2.1 | None | SRR1232578 | Sensitive | lineage4.1.2.1;lineage4.9 | None | SRR121583 | Sensitive | lineage4.1.2.1 | None | SRR1223347 | Sensitive | lineage4.1.2.1 | None | SRR1231639 | Sensitive | lineage4.1.2.1 | None | SRR1222390 | Sensitive | lineage4.1.2.1 | None | SRR1232447 | Sensitive | lineage4.1.2.1;lineage4.9 | None | SRR25666661 | Sensitive | lineage4.1.2.1 | None | SRR1230667 | Sensitive | lineage4.1.2.1;lineage4.9 | None | SRR25666649 | Sensitive | lineage4.1.2.1 | None | SRR1221665 | Sensitive | lineage4.1.2.1;lineage4.9 | None | SRR1214330 | Sensitive | lineage4.1.2.1 | None | SRR1221510 | Sensitive | lineage4.1.2.1 | None | SRR25666610 | Sensitive | lineage4.1.2.1 | None | SRR1214019 | Sensitive | lineage4.1.2.1 | None | SRR25666635 | Sensitive | lineage4.1.2.1 | None | SRR25666645 | Sensitive | lineage4.1.2.1 | None | SRR1643048 | RR-TB | lineage4.1.2.1 | None | SRR023493 | Sensitive | lineage4.1.2.1;lineage4.9 | None | ERR473290 | HR-TB | lineage4.3.4.2.1 | None | SRR25666608 | Sensitive | lineage4.1.2.1 | None | SRR25666647 | Sensitive | lineage4.1.2.1 | None | SRR1643050 | RR-TB | lineage4.1.2.1 | None | SRR25666648 | Sensitive | lineage4.1.2.1 | None | ERR1227515 | RR-TB | lineage4.1.2.1 | None | SRR1019195 | Sensitive | lineage4.1.2.1 | None | SRR121591 | Sensitive | lineage4.1.2.1 | None | SRR25666606 | Sensitive | lineage4.1.2.1 | None | SRR1231817 | Sensitive | lineage4.1.2.1 | None | SRR1642991 | RR-TB | lineage4.1.2.1 | None | SRR032851 | Sensitive | lineage4.1.2.1 | None | SRR25666654 | Sensitive | lineage4.1.2.1 | None | SRR10033116 | Sensitive | lineage4.1.2.1 | None | SRR25666650 | Sensitive | lineage4.1.2.1 | None | SRR023427 | Sensitive | lineage4.1.2.1;lineage4.9 | None | SRR11040617 | Sensitive | lineage4.1.2.1 | None | ERR1971859 | Sensitive | lineage7 | et | ERR245718 | HR-TB | lineage4.3.4.2.1 | mw | SRR1643051 | RR-TB | lineage4.1.2.1 | None | SRR1219064 | Sensitive | lineage4.1.2.1 | None | SRR26442319 | Sensitive | lineage4.1.2.1 | None | SRR7517711 | Sensitive | lineage4.1.2.1 | ch | SRR1223208 | Sensitive | lineage4.1.2.1 | None | SRR15217977 | Sensitive | lineage4.1.2.1 | None | ERR1227518 | RR-TB | lineage4.1.2.1 | None | SRR25666619 | Sensitive | lineage4.1.2.1 | None | SRR10033117 | Sensitive | lineage4.1.2.1 | None | SRR25666605 | Sensitive | lineage4.1.2.1 | None | SRR25666630 | Sensitive | lineage4.1.2.1 | None | SRR1214982 | Sensitive | lineage4.1.2.1 | None | SRR023474 | Sensitive | lineage4.1.2.1 | None | SRR21859821 | Sensitive | lineage4.1.2.1 | None | SRR1230502 | Sensitive | lineage4.1.2.1 | None | SRR1218187 | Sensitive | lineage4.1.2.1 | None | SRR1220027 | Sensitive | lineage4.1.2.1 | None | ERR11044650 | Sensitive | lineage4.5 | None | ERR1227513 | Sensitive | lineage4.1.2.1 | None | SRR023444 | Sensitive | lineage4.1.2.1;lineage4.9 | None | SRR10033113 | Sensitive | lineage4.1.2.1 | None | SRR25666609 | Sensitive | lineage4.1.2.1 | None | SRR25666660 | Sensitive | lineage4.1.2.1 | None | SRR26442323 | Sensitive | lineage4.1.2.1 | None | SRR1232984 | Sensitive | lineage4.1.2.1 | None | SRR023494 | Sensitive | lineage4.1.2.1 | None | SRR25666602 | Sensitive | lineage4.1.2.1 | None | SRR1218208 | Sensitive | lineage4.1.2.1 | None | ERR1227519 | RR-TB | lineage4.1.2.1 | None | SRR25666644 | Sensitive | lineage4.1.2.1 | None | SRR10033120 | Sensitive | lineage4.1.2.1 | None | SRR023463 | Sensitive | lineage4.1.2.1 | None | SRR1220015 | Sensitive | lineage4.1.2.1 | None | SRR023473 | Sensitive | lineage4.1.2.1 | None | SRR1220028 | Sensitive | lineage4.1.2.1 | None | SRR25666651 | Sensitive | lineage4.1.2.1 | None | SRR023460 | Sensitive | lineage4.1.2.1;lineage4.9 | None | SRR10033115 | Sensitive | lineage4.1.2.1 | None | SRR25666636 | Sensitive | lineage4.1.2.1 | None | SRR1011525 | Sensitive | lineage4.1.2.1 | None | SRR26442321 | Sensitive | lineage4.1.2.1 | None | SRR1233011 | Sensitive | lineage4.1.2.1 | None | SRR25666638 | Sensitive | lineage4.1.2.1 | None | SRR1221048 | Sensitive | lineage4.1.2.1 | None | SRR25666639 | Sensitive | lineage4.1.2.1 | None | SRR25666612 | Sensitive | lineage4.1.2.1 | None | SRR25666652 | Sensitive | lineage4.1.2.1 | None | SRR1231407 | Sensitive | lineage4.1.2.1 | None | SRR023464 | Sensitive | lineage4.1.2.1 | None | SRR25666607 | Sensitive | lineage4.1.2.1 | None | SRR25666601 | Sensitive | lineage4.1.2.1 | None | SRR1230626 | Sensitive | lineage4.1.2.1 | None | SRR121588 | Sensitive | lineage4.1.2.1 | None | SRR185871 | Sensitive | lineage4.1.2.1 | None | SRR023469 | Sensitive | lineage4.1.2.1 | None | SRR1233649 | Sensitive | lineage4.1.2.1;lineage4.9 | None | SRR1232518 | Sensitive | lineage4.1.2.1;lineage4.9 | None | SRR1232792 | Sensitive | lineage4.1.2.1 | None | ERR13267747 | Sensitive | lineage4.5 | None | SRR157506 | Sensitive | lineage4.1.2.1 | None | SRR1222344 | Sensitive | lineage4.1.2.1 | None | SRR21689563 | Sensitive | lineage2.2.1 | None | SRR023472 | Sensitive | lineage4.1.2.1 | None | ERR4798448 | Other | lineage1.1.2 | in | ERR1227520 | RR-TB | lineage4.1.2.1 | None | ERR4798737 | Other | lineage1.1.2 | in | SRR15217979 | Sensitive | lineage4.1.2.1 | None | SRR1643047 | RR-TB | lineage4.1.2.1 | None | ERR13266455 | HR-TB | lineage1.2.2.2 | None | SRR023462 | Sensitive | lineage4.1.2.1 | None | SRR10033114 | Sensitive | lineage4.1.2.1 | None | SRR023458 | Sensitive | lineage4.1.2.1 | None | SRR1214742 | Sensitive | lineage4.1.2.1;lineage4.9 | None | SRR121585 | Sensitive | lineage4.1.2.1 | None | SRR121586 | Sensitive | lineage4.1.2.1 | None | SRR1216233 | Sensitive | lineage4.1.2.1;lineage4.9 | None | ERR718539 | Sensitive | lineage1.1.1 | th | SRR25666640 | Sensitive | lineage4.1.2.1 | None | SRR1642989 | Sensitive | lineage4.1.2.1 | None | SRR1230911 | Sensitive | lineage4.1.2.1 | None | SRR1231644 | Sensitive | lineage4.1.2.1 | None | ERR768007 | Sensitive | lineage1.1.1 | th | ERR245733 | HR-TB | lineage4.3.4.2.1 | mw | SRR11040618 | Sensitive | lineage4.1.2.1 | None | SRR1222244 | Sensitive | lineage4.1.2.1 | None | ERR176696 | HR-TB | lineage4.3.4.2.1 | mw | ERR181762 | HR-TB | lineage4.3.4.2.1 | mw | SRR25666600 | Sensitive | lineage4.1.2.1 | None | SRR10033112 | Sensitive | lineage4.1.2.1 | None | ERR182037 | HR-TB | lineage4.3.4.2.1 | mw | SRR1642939 | Sensitive | lineage4.1.2.1 | None | SRR1643046 | RR-TB | lineage4.1.2.1 | None | SRR11040619 | Sensitive | lineage4.1.2.1 | None | SRR023465 | Sensitive | lineage4.1.2.1 | None | SRR26442320 | Sensitive | lineage4.1.2.1 | None | SRR25666615 | Sensitive | lineage4.1.2.1 | None | SRR25666656 | Sensitive | lineage4.1.2.1 | None | ERR1227516 | RR-TB | lineage4.1.2.1 | None | SRR023445 | Sensitive | lineage4.1.2.1;lineage4.9 | None | SRR023471 | Sensitive | lineage4.1.2.1 | None | SRR10033121 | Sensitive | lineage4.1.2.1 | None | SRR1218963 | Sensitive | lineage4.1.2.1 | None | SRR1642938 | RR-TB | lineage4.1.2.1 | None | SRR023461 | Sensitive | lineage4.1.2.1 | None | SRR15014639 | MDR-TB | lineage1.1.2 | None | SRR25666604 | Sensitive | lineage4.1.2.1 | None | SRR1219101 | Sensitive | lineage4.1.2.1;lineage4.9 | None | SRR8588266 | Sensitive | lineage4.1.2.1 | None | SRR26442322 | Sensitive | lineage4.1.2.1 | None | SRR023467 | Sensitive | lineage4.1.2.1 | None | SRR1214563 | Sensitive | lineage4.1.2.1;lineage4.9 | None | SRR1232671 | Sensitive | lineage4.1.2.1 | None | SRR1232692 | Sensitive | lineage4.1.2.1;lineage4.9 | None | ERR1227521 | RR-TB | lineage4.1.2.1 | None | SRR1642937 | RR-TB | lineage4.1.2.1 | None | SRR25666657 | Sensitive | lineage4.1.2.1 | None | SRR25666611 | Sensitive | lineage4.1.2.1 | None | SRR1642940 | HR-TB | lineage4.1.2.1 | None | SRR25666637 | Sensitive | lineage4.1.2.1 | None | SRR24083712 | Sensitive | lineage4.1.2.1 | None | SRR21859820 | Sensitive | lineage4.1.2.1 | None | SRR121587 | Sensitive | lineage4.1.2.1 | None | ERR181934 | HR-TB | lineage4.3.4.2.1 | mw | ERR190393 | HR-TB | lineage4.3.4.2.1 | mw | SRR25666646 | Sensitive | lineage4.1.2.1 | None | SRR1643049 | RR-TB | lineage4.1.2.1 | None | SRR1230888 | Sensitive | lineage4.1.2.1;lineage4.9 | None | SRR25666655 | Sensitive | lineage4.1.2.1 | None | ERR4796792 | MDR-TB | lineage4.2.2.2 | in | ERR1227512 | Sensitive | lineage4.1.2.1 | None | SRR1223192 | Sensitive | lineage4.1.2.1 | None | SRR1214493 | Sensitive | lineage4.1.2.1 | None | ERR1227517 | RR-TB | lineage4.1.2.1 | None | SRR23080332 | Sensitive | lineage4.1.2.1 | None | SRR1643010 | RR-TB | lineage4.1.2.1 | None | SRR17658000 | Sensitive | lineage4.1.2.1 | None | SRR1231267 | Sensitive | lineage4.1.2.1 | None | SRR12882473 | Sensitive | lineage1.1.2 | None | SRR849485 | Sensitive | lineage4.1.2.1 | None | SRR15217978 | Sensitive | lineage4.1.2.1 | None | SRR25666595 | Sensitive | lineage4.1.2.1 | None |
|---|
