Run ID: SRR023461
Sample name:
Date: 02-04-2023 14:12:43
Number of reads: 12635132
Percentage reads mapped: 89.8
Strain: lineage4.1.2.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 1.0 |
lineage4.1.2 | Euro-American | T;H | None | 1.0 |
lineage4.1.2.1 | Euro-American (Haarlem) | T1;H1 | RD182 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491591 | p.Lys270Met | missense_variant | 1.0 |
mshA | 575679 | p.Asn111Ser | missense_variant | 0.96 |
ccsA | 619746 | c.-145A>G | upstream_gene_variant | 0.17 |
ccsA | 619772 | c.-119A>G | upstream_gene_variant | 0.14 |
ccsA | 619828 | c.-63G>T | upstream_gene_variant | 0.12 |
rpoB | 760115 | c.309C>T | synonymous_variant | 1.0 |
rpoB | 761662 | p.Leu619Gln | missense_variant | 0.25 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
rpoC | 767314 | p.Tyr1315* | stop_gained | 0.18 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1304241 | p.Glu437Asp | missense_variant | 0.12 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
fabG1 | 1673449 | p.Thr4Pro | missense_variant | 0.2 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518076 | c.-39C>T | upstream_gene_variant | 1.0 |
eis | 2715015 | c.318C>A | synonymous_variant | 0.18 |
Rv2752c | 3064751 | p.Arg481Cys | missense_variant | 0.99 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
Rv3083 | 3448823 | p.Ala107Asp | missense_variant | 0.13 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 0.99 |
fbiA | 3640379 | c.-164T>C | upstream_gene_variant | 1.0 |
fbiB | 3642026 | c.492A>G | synonymous_variant | 0.4 |
fbiB | 3642182 | c.648G>A | synonymous_variant | 0.27 |
fbiB | 3642183 | p.Val217Leu | missense_variant | 0.22 |
embC | 4240479 | p.Gly206Asp | missense_variant | 0.12 |
embC | 4240545 | p.Pro228Gln | missense_variant | 0.15 |
embC | 4241271 | p.Leu470Pro | missense_variant | 0.13 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
embB | 4246765 | c.252G>T | synonymous_variant | 0.25 |
embB | 4248659 | p.Ala716Ser | missense_variant | 0.14 |
aftB | 4268804 | c.33G>T | synonymous_variant | 0.17 |
ethA | 4328438 | c.-965C>A | upstream_gene_variant | 0.15 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |