Run ID: SRR10809082
Sample name:
Date: 02-04-2023 19:22:23
Number of reads: 726095
Percentage reads mapped: 99.49
Strain: lineage4.1.2.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 1.0 |
lineage4.1.2 | Euro-American | T;H | None | 1.0 |
lineage4.1.2.1 | Euro-American (Haarlem) | T1;H1 | RD182 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
gyrA | 9564 | p.Tyr755Asn | missense_variant | 0.11 |
fgd1 | 491591 | p.Lys270Met | missense_variant | 1.0 |
mshA | 575679 | p.Asn111Ser | missense_variant | 1.0 |
mshA | 576108 | p.Ala254Gly | missense_variant | 0.36 |
rpoB | 759714 | c.-93C>T | upstream_gene_variant | 0.1 |
rpoB | 760115 | c.309C>T | synonymous_variant | 1.0 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpR5 | 779078 | p.Arg30Thr | missense_variant | 0.12 |
mmpR5 | 779098 | p.Gly37Cys | missense_variant | 0.14 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
fabG1 | 1673346 | c.-94C>G | upstream_gene_variant | 0.11 |
fabG1 | 1673349 | c.-91G>C | upstream_gene_variant | 0.11 |
fabG1 | 1673357 | c.-83G>A | upstream_gene_variant | 0.12 |
fabG1 | 1673359 | c.-81T>C | upstream_gene_variant | 0.12 |
fabG1 | 1673361 | c.-79C>G | upstream_gene_variant | 0.12 |
fabG1 | 1673380 | c.-60C>G | upstream_gene_variant | 0.19 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
tlyA | 1918358 | p.Thr140Ile | missense_variant | 1.0 |
PPE35 | 2169056 | c.1557A>T | synonymous_variant | 0.25 |
PPE35 | 2170048 | p.Leu189Val | missense_variant | 0.25 |
PPE35 | 2170053 | p.Thr187Ser | missense_variant | 0.21 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518076 | c.-39C>T | upstream_gene_variant | 1.0 |
folC | 2746314 | p.Arg429Trp | missense_variant | 0.13 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
panD | 4044257 | c.24dupG | frameshift_variant | 0.2 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
embB | 4248301 | p.Phe596Leu | missense_variant | 0.13 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |