Run ID: SRR10809105
Sample name:
Date: 02-04-2023 19:24:26
Number of reads: 1024901
Percentage reads mapped: 99.66
Strain: lineage4.4.1.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.4 | Euro-American | S;T | None | 1.0 |
lineage4.4.1 | Euro-American (S-type) | S;T | None | 1.0 |
lineage4.4.1.1 | Euro-American | S;Orphans | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
mshA | 576108 | p.Ala254Gly | missense_variant | 0.42 |
mshA | 576111 | p.Ala255Gly | missense_variant | 0.14 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
fabG1 | 1673357 | c.-83G>A | upstream_gene_variant | 0.13 |
fabG1 | 1673359 | c.-81T>C | upstream_gene_variant | 0.14 |
fabG1 | 1673361 | c.-79C>G | upstream_gene_variant | 0.14 |
fabG1 | 1673380 | c.-60C>G | upstream_gene_variant | 0.23 |
fabG1 | 1674142 | p.Ala235Thr | missense_variant | 0.12 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2102990 | p.Val18Ala | missense_variant | 1.0 |
katG | 2153970 | p.Asp714Glu | missense_variant | 0.14 |
PPE35 | 2169031 | p.Asp528Tyr | missense_variant | 0.25 |
PPE35 | 2169840 | p.Gly258Asp | missense_variant | 1.0 |
PPE35 | 2170048 | p.Leu189Val | missense_variant | 0.64 |
PPE35 | 2170053 | p.Thr187Ser | missense_variant | 0.64 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289384 | c.-143C>T | upstream_gene_variant | 0.15 |
pncA | 2289414 | c.-173A>G | upstream_gene_variant | 0.12 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fbiD | 3339734 | p.Ala206Gly | missense_variant | 0.18 |
Rv3083 | 3448608 | c.105G>A | synonymous_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
Rv3236c | 3612542 | p.Leu192Ser | missense_variant | 0.11 |
Rv3236c | 3612665 | p.Val151Ala | missense_variant | 1.0 |
embC | 4240757 | p.Thr299Ala | missense_variant | 0.12 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4246544 | p.Thr11Pro | missense_variant | 0.4 |
embB | 4246548 | p.Pro12Gln | missense_variant | 0.5 |
embB | 4246555 | c.42G>C | synonymous_variant | 0.56 |
embB | 4246556 | p.Ala15Pro | missense_variant | 0.56 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407805 | p.Ala133Gly | missense_variant | 1.0 |