Run ID: SRR10851741
Sample name:
Date: 02-04-2023 19:33:51
Number of reads: 887651
Percentage reads mapped: 91.18
Strain: lineage4.3.4.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.3 | Euro-American (LAM) | mainly-LAM | None | 1.0 |
lineage4.3.4 | Euro-American (LAM) | LAM | RD174 | 1.0 |
lineage4.3.4.1 | Euro-American (LAM) | LAM1;LAM2 | RD174 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8715 | p.Pro472Ser | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 490756 | c.-27T>G | upstream_gene_variant | 0.13 |
mshA | 576108 | p.Ala254Gly | missense_variant | 0.3 |
mshA | 576111 | p.Ala255Gly | missense_variant | 0.15 |
rpoB | 759608 | c.-199C>T | upstream_gene_variant | 1.0 |
rpoC | 764995 | c.1626C>G | synonymous_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472029 | n.184C>T | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472508 | n.663T>C | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472513 | n.668T>C | non_coding_transcript_exon_variant | 0.23 |
rrs | 1473183 | n.1338A>G | non_coding_transcript_exon_variant | 0.18 |
rrl | 1473646 | n.-12T>C | upstream_gene_variant | 0.15 |
rrl | 1474896 | n.1239A>G | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476436 | n.2779A>G | non_coding_transcript_exon_variant | 0.13 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
ahpC | 2726323 | p.Pro44Arg | missense_variant | 1.0 |
pepQ | 2859830 | p.Gly197Arg | missense_variant | 1.0 |
thyA | 3073868 | p.Thr202Ala | missense_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
Rv3083 | 3448598 | p.Ile32Thr | missense_variant | 1.0 |
Rv3083 | 3448879 | p.Gly126Ser | missense_variant | 0.12 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
Rv3236c | 3612009 | p.Ala370Thr | missense_variant | 1.0 |
Rv3236c | 3612768 | p.Ala117Pro | missense_variant | 1.0 |
rpoA | 3878630 | c.-123G>C | upstream_gene_variant | 0.22 |
clpC1 | 4038287 | c.2418C>T | synonymous_variant | 1.0 |
clpC1 | 4040566 | p.Lys47Gln | missense_variant | 0.19 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4408156 | p.Leu16Arg | missense_variant | 1.0 |