TB-Profiler result

Run: SRR13736074
Summary

Run ID: SRR13736074

Sample name:

Date: 03-04-2023 09:09:15

Number of reads: 1277931

Percentage reads mapped: 99.95

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7827 p.Asn176Asp missense_variant 0.12
rpoB 762267 p.Glu821* stop_gained 0.14
mmpS5 779589 c.-684C>A upstream_gene_variant 0.11
rpsA 1834089 c.550delG frameshift_variant 0.11
katG 2154711 c.1401G>A synonymous_variant 0.15
katG 2155178 p.Ala312Thr missense_variant 0.12
PPE35 2169013 p.Val534Leu missense_variant 0.11
eis 2714868 c.465C>T synonymous_variant 0.13
embC 4242674 p.Ser938Gly missense_variant 0.13