Rv1819c - c.1650dupG
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
4 Sensitive
7 RR-TB
4 HR-TB
54 MDR-TB
122 Pre-XDR-TB
11 XDR-TB
2 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1.1.3 | 25 |
| lineage4.1.2.1 | 15 |
| lineage4.3.3 | 37 |
| lineage4.8 | 13 |
| lineage4 | 4 |
| lineage2.2.1 | 45 |
| lineage2.2.1.1 | 4 |
| lineage4.3.4.2 | 9 |
| lineage3 | 5 |
| lineage2.2.2 | 3 |
| lineage4.2.1 | 7 |
| lineage4.4.1.1 | 10 |
| lineage4.2.2.2 | 2 |
| lineage4.2.2.1 | 2 |
| lineage4.1.2.1;lineage4.8 | 1 |
| lineage4.3.2 | 3 |
| lineage4.4.2 | 2 |
| lineage4.3.4.1 | 5 |
| lineage4.2.2 | 2 |
| lineage4.1.2.1;lineage4.3.3;lineage4.9 | 1 |
| lineage4.1.1.2 | 1 |
| lineage4.6.4 | 1 |
| lineage4.3 | 1 |
| lineage4.1.1.3.1 | 1 |
| lineage4.6.2.2 | 1 |
| lineage2.2.2;lineage4.1.1.3 | 1 |
| lineage2;lineage3 | 1 |
| lineage4.9 | 1 |
| lineage4.3.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 204 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR11488954 | XDR-TB | lineage4.1.1.3 | None | ERR12117947 | MDR-TB | lineage4.1.2.1 | None | SRR22536482 | MDR-TB | lineage4.3.3 | None | ERR2653083 | Pre-XDR-TB | lineage4.3.3 | None | SRR10315476 | MDR-TB | lineage4.8 | None | ERR13260681 | MDR-TB | lineage4 | None | SRR1180385 | MDR-TB | lineage2.2.1 | None | SRR1181042 | MDR-TB | lineage2.2.1 | None | ERR7737778 | MDR-TB | lineage2.2.1.1 | None | SRR1163341 | Pre-XDR-TB | lineage4.3.3 | None | ERR4813314 | Pre-XDR-TB | lineage4.3.4.2 | None | SRR29289373 | XDR-TB | lineage2.2.1 | None | ERR1035037 | MDR-TB | lineage4.1.1.3 | za | ERR1163058 | MDR-TB | lineage4.8 | None | ERR5866437 | Pre-XDR-TB | lineage2.2.1 | None | ERR3335750 | Pre-XDR-TB | lineage3 | pk | ERR1035312 | Pre-XDR-TB | lineage4.3.3 | br | ERR4813836 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR13260663 | Pre-XDR-TB | lineage4.3.3 | None | SRR7781508 | XDR-TB | lineage4.1.2.1 | None | ERR4800371 | MDR-TB | lineage2.2.1.1 | in | SRR1165213 | Pre-XDR-TB | lineage2.2.2 | None | SRR3742664 | Pre-XDR-TB | lineage2.2.1 | None | ERR1035271 | Pre-XDR-TB | lineage4.3.4.2 | br | ERR4797962 | XDR-TB | lineage4.1.1.3 | in | ERR11798713 | Pre-XDR-TB | lineage4.2.1 | None | ERR5866436 | Pre-XDR-TB | lineage2.2.1 | None | ERR4813848 | Pre-XDR-TB | lineage4.4.1.1 | None | ERR4830805 | MDR-TB | lineage4.2.2.2 | et | ERR9806983 | Pre-XDR-TB | lineage2.2.1 | None | ERR4813666 | MDR-TB | lineage4.3.4.2 | None | ERR2653115 | Pre-XDR-TB | lineage4.3.3 | None | ERR2307521 | Pre-XDR-TB | lineage2.2.1 | None | ERR3287830 | Pre-XDR-TB | lineage4.1.2.1 | pe | ERR3287335 | Pre-XDR-TB | lineage4.3.3 | pe | SRR28393389 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR3287619 | MDR-TB | lineage4.3.4.2 | pe | ERR751593 | Pre-XDR-TB | lineage4.3.4.2 | pe | ERR5865036 | Pre-XDR-TB | lineage2.2.1 | None | ERR4813863 | MDR-TB | lineage4.3.3 | br | ERR4810467 | Pre-XDR-TB | lineage2.2.1 | cn | ERR8665921 | Pre-XDR-TB | lineage4.3.3 | None | ERR751562 | Pre-XDR-TB | lineage4.3.3 | pe | ERR4828779 | Pre-XDR-TB | lineage2.2.1 | None | ERR4828788 | XDR-TB | lineage4.1.2.1 | None | ERR4830499 | MDR-TB | lineage4.4.1.1 | za | ERR4813053 | MDR-TB | lineage4.3.3 | None | ERR4813185 | Pre-XDR-TB | lineage4.3.3 | pe | ERR4830785 | Pre-XDR-TB | lineage4.2.2.2 | et | ERR8665682 | Pre-XDR-TB | lineage4.3.3 | None | ERR553245 | Sensitive | lineage4.2.2.1 | de | SRR2100132 | Pre-XDR-TB | lineage4.8 | None | ERR1873531 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR2516733 | MDR-TB | lineage2.2.1 | pe | SRR29093412 | Pre-XDR-TB | lineage4.3.3 | None | SRR7829582 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR9806910 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1180316 | MDR-TB | lineage2.2.1 | None | SRR28393588 | MDR-TB | lineage4.1.2.1;lineage4.8 | None | SAMN02586083 | MDR-TB | lineage2.2.1 | za | ERR067605 | Pre-XDR-TB | lineage2.2.1 | ru | SRR28393594 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093187 | MDR-TB | lineage2.2.1.1 | None | SRR13870404 | Pre-XDR-TB | lineage4.3.3 | None | ERR4813820 | Pre-XDR-TB | lineage4.3.2 | None | SRR9971337 | MDR-TB | lineage4.8 | None | ERR2510729 | Pre-XDR-TB | lineage4.1.2.1 | it | SRR28393321 | MDR-TB | lineage4.3.3 | None | SRR1173587 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR19276609 | MDR-TB | lineage4.3.2 | None | ERR11081826 | RR-TB | lineage4.1.2.1 | None | SRR1167271 | MDR-TB | lineage4.1.1.3 | None | SRR12062528 | Pre-XDR-TB | lineage4.4.2 | None | ERR8025751 | Pre-XDR-TB | lineage2.2.1 | None | SRR15901693 | Pre-XDR-TB | lineage2.2.1 | None | SRR29274129 | XDR-TB | lineage4.1.2.1 | None | SRR10869197 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR973455 | RR-TB | lineage4.3.4.1 | None | ERR1873391 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1168987 | Pre-XDR-TB | lineage4.3.3 | None | SRR21277547 | Sensitive | lineage4.2.2 | None | ERR13284858 | MDR-TB | lineage4.1.2.1 | None | SRR25827384 | Sensitive | lineage3 | None | SRR7653001 | MDR-TB | lineage2.2.1 | None | ERR4813842 | HR-TB | lineage4.3.4.1 | None | SRR6785352 | HR-TB | lineage4.1.2.1;lineage4.3.3;lineage4.9 | None | ERR13261232 | HR-TB | lineage2.2.1 | None | SRR12062527 | Pre-XDR-TB | lineage4.4.2 | None | SRR7755762 | Pre-XDR-TB | lineage4.2.1 | None | SRR10315463 | MDR-TB | lineage4.4.1.1 | None | SRR29093651 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29094374 | MDR-TB | lineage4.1.1.2 | None | SRR29051515 | Pre-XDR-TB | lineage4.3.4.2 | None | SRR14801458 | Pre-XDR-TB | lineage4.2.1 | None | ERR4796827 | RR-TB | lineage2.2.1 | in | ERR1035363 | Pre-XDR-TB | lineage4.6.4 | br | ERR4798443 | Pre-XDR-TB | lineage2.2.1 | in | SRR10869101 | MDR-TB | lineage2.2.1.1 | None | ERR13260877 | MDR-TB | lineage4.8 | None | SRR7653027 | Pre-XDR-TB | lineage2.2.1 | None | ERR8025508 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR9971027 | MDR-TB | lineage4.4.1.1 | None | SRR1163140 | Pre-XDR-TB | lineage4.3.3 | None | SRR29273831 | MDR-TB | lineage4.1.2.1 | None | ERR8665594 | Pre-XDR-TB | lineage4.3.3 | None | ERR13260619 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR4813855 | Pre-XDR-TB | lineage4.3.3 | br | ERR3287832 | HR-TB | lineage4.3.3 | pe | ERR4830480 | MDR-TB | lineage4.8 | za | ERR4830490 | MDR-TB | lineage4.4.1.1 | za | ERR4813038 | MDR-TB | lineage4.1.2.1 | pe | ERR4830781 | Pre-XDR-TB | lineage4.1.2.1 | et | ERR8975512 | XDR-TB | lineage4.4.1.1 | None | ERR046796 | Pre-XDR-TB | lineage4.8 | gb | ERR2516619 | Pre-XDR-TB | lineage4.3.3 | pe | ERR046922 | Other | lineage4.2.2 | gb | ERR4813694 | Pre-XDR-TB | lineage4.3.3 | None | SAMN02419661 | Pre-XDR-TB | lineage4.3.3 | by | SRR16156780 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR7755664 | Pre-XDR-TB | lineage4.2.1 | None | SRR29772736 | Pre-XDR-TB | lineage4.3 | None | ERR4813215 | Pre-XDR-TB | lineage4.3.3 | None | SRR13870364 | Pre-XDR-TB | lineage4 | None | ERR072083 | Pre-XDR-TB | lineage4.8 | None | ERR046944 | Pre-XDR-TB | lineage4.8 | None | ERR11488733 | MDR-TB | lineage4.1.1.3 | None | SRR1165306 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR10315554 | Pre-XDR-TB | lineage4.3.3 | None | SRR13232605 | MDR-TB | lineage2.2.1 | None | SRR10315474 | MDR-TB | lineage4.8 | None | SRR29274155 | XDR-TB | lineage4.1.2.1 | None | ERR8025655 | Pre-XDR-TB | lineage2.2.1 | None | ERR8025660 | Pre-XDR-TB | lineage2.2.1 | None | ERR8975031 | MDR-TB | lineage2.2.1 | None | SRR1167276 | Pre-XDR-TB | lineage2.2.2 | None | ERR2515304 | Pre-XDR-TB | lineage2.2.1 | za | SRR1183968 | MDR-TB | lineage2.2.1 | None | SRR23311047 | Pre-XDR-TB | lineage4.2.1 | None | SRR22536489 | MDR-TB | lineage4.3.3 | None | ERR973456 | RR-TB | lineage4.3.4.1 | None | ERR4828115 | MDR-TB | lineage2.2.1 | None | ERR11069028 | MDR-TB | lineage4.1.2.1 | None | ERR9806984 | Pre-XDR-TB | lineage2.2.1 | None | ERR1873392 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR16509481 | MDR-TB | lineage4.3.3 | None | SRR23340052 | Pre-XDR-TB | lineage4.3.3 | None | SRR11662248 | MDR-TB | lineage2.2.1 | None | SRR1367217 | Pre-XDR-TB | lineage2.2.1 | None | SRR29096872 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29094023 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR5979454 | Pre-XDR-TB | lineage3 | None | SRR16156859 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR9992784 | XDR-TB | lineage2.2.2 | None | SRR10315475 | MDR-TB | lineage4.8 | None | SRR10315464 | MDR-TB | lineage4.4.1.1 | None | SAMN02403525 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29385313 | Other | lineage2.2.1 | None | SRR10315465 | MDR-TB | lineage4.4.1.1 | None | ERR13260693 | Pre-XDR-TB | lineage4.3.3 | None | ERR973457 | RR-TB | lineage4.3.4.1 | None | ERR4798841 | Pre-XDR-TB | lineage2.2.1 | None | SRR24673508 | Pre-XDR-TB | lineage2.2.1 | None | SRR16156791 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR28119727 | Pre-XDR-TB | lineage2.2.1 | None | SRR29289285 | Pre-XDR-TB | lineage3 | None | SRR16156800 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29289325 | XDR-TB | lineage2.2.1 | None | ERR2653146 | Pre-XDR-TB | lineage4.3.3 | None | ERR13288994 | MDR-TB | lineage2.2.1 | None | SRR7755671 | Pre-XDR-TB | lineage4.2.1 | None | ERR4972528 | Pre-XDR-TB | lineage4.3.3 | None | SRR671815 | Pre-XDR-TB | lineage2.2.1 | cn | SRR1172299 | Pre-XDR-TB | lineage4.3.3 | None | ERR3287581 | MDR-TB | lineage4 | pe | ERR7911010 | MDR-TB | lineage4.3.2 | pe | ERR751548 | Pre-XDR-TB | lineage4.3.3 | pe | ERR4813109 | MDR-TB | lineage4 | pe | ERR046903 | Pre-XDR-TB | lineage4.8 | gb | SRR1173213 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR2041729 | Pre-XDR-TB | lineage4.2.2.1 | rs | SRR16156779 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR046917 | Pre-XDR-TB | lineage4.1.1.3.1 | gb | ERR2653195 | Pre-XDR-TB | lineage4.4.1.1 | None | SRR7646041 | Pre-XDR-TB | lineage4.2.1 | None | ERR10680141 | MDR-TB | lineage4.6.2.2 | None | SRR9224916 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR5865035 | Pre-XDR-TB | lineage2.2.1 | None | SRR11349192 | Pre-XDR-TB | lineage4.3.3 | None | ERR13286205 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR13289270 | RR-TB | lineage2.2.1 | None | ERR13288961 | XDR-TB | lineage4.1.1.3 | None | ERR13289008 | Pre-XDR-TB | lineage2.2.2;lineage4.1.1.3 | None | ERR1035359 | Pre-XDR-TB | lineage4.3.4.1 | br | SRR8346382 | Pre-XDR-TB | lineage2.2.1 | None | ERR4829977 | RR-TB | lineage2;lineage3 | pk | SRR13736074 | Sensitive | lineage4.9 | None | SRR14781924 | Pre-XDR-TB | lineage2.2.1 | None | ERR3014593 | Pre-XDR-TB | lineage4.3.1 | tn | ERR047891 | Pre-XDR-TB | lineage4.8 | None | SRR13870379 | Pre-XDR-TB | lineage4.3.3 | None | SRR22424933 | Pre-XDR-TB | lineage3 | None | ERR4813823 | Pre-XDR-TB | lineage4.4.1.1 | None | ERR8665681 | Pre-XDR-TB | lineage4.3.3 | None | ERR13266674 | Pre-XDR-TB | lineage2.2.1 | None |
|---|
