Run ID: SRR13837499
Sample name:
Date: 03-04-2023 09:11:53
Number of reads: 595208
Percentage reads mapped: 97.24
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5149 | c.-91G>C | upstream_gene_variant | 1.0 |
gyrB | 7090 | p.Asp617Glu | missense_variant | 1.0 |
gyrA | 8436 | p.Tyr379Asn | missense_variant | 0.96 |
fgd1 | 491701 | p.His307Asn | missense_variant | 1.0 |
ccsA | 619765 | c.-126G>A | upstream_gene_variant | 1.0 |
rpoB | 760805 | c.999G>C | synonymous_variant | 0.17 |
rpoB | 760817 | c.1011A>G | synonymous_variant | 0.25 |
rpoB | 760820 | c.1014T>C | synonymous_variant | 0.25 |
rpoB | 760826 | c.1020C>G | synonymous_variant | 0.29 |
rpoB | 760830 | c.1024T>C | synonymous_variant | 0.29 |
rpoB | 760845 | p.Thr347Pro | missense_variant | 0.2 |
rpoB | 760859 | c.1053T>C | synonymous_variant | 0.18 |
rpoB | 760869 | p.Val355Ile | missense_variant | 0.18 |
rpoB | 760886 | c.1080A>G | synonymous_variant | 0.2 |
rpoB | 760919 | c.1113C>G | synonymous_variant | 0.2 |
rpoB | 760925 | c.1119T>C | synonymous_variant | 0.18 |
rpoB | 760928 | c.1122G>C | synonymous_variant | 0.18 |
rpoB | 760934 | c.1128C>T | synonymous_variant | 0.16 |
rpoB | 760946 | c.1140A>G | synonymous_variant | 0.15 |
rpoC | 764320 | c.951C>G | synonymous_variant | 0.12 |
rpoC | 764381 | p.Ser338Thr | missense_variant | 0.11 |
rpoC | 764431 | c.1062G>C | synonymous_variant | 0.11 |
rpoC | 764434 | c.1065A>G | synonymous_variant | 0.12 |
rpoC | 766043 | p.Gln892Glu | missense_variant | 0.11 |
mmpL5 | 775867 | p.Arg872Gly | missense_variant | 0.93 |
mmpL5 | 775966 | p.Ala839Ser | missense_variant | 0.17 |
mmpL5 | 776710 | p.Cys591Ser | missense_variant | 1.0 |
mmpL5 | 777625 | p.Gln286Lys | missense_variant | 1.0 |
mmpS5 | 778811 | p.Phe32Ser | missense_variant | 1.0 |
embR | 1416901 | c.447G>C | synonymous_variant | 1.0 |
rrl | 1474466 | n.810delA | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475224 | n.1567T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476589 | n.2932G>A | non_coding_transcript_exon_variant | 0.95 |
PPE35 | 2170487 | c.126T>A | synonymous_variant | 1.0 |
Rv1979c | 2221853 | p.Phe438Ile | missense_variant | 1.0 |
folC | 2747314 | c.285A>C | synonymous_variant | 0.14 |
folC | 2747317 | c.282C>G | synonymous_variant | 0.14 |
folC | 2747355 | p.Val82Ile | missense_variant | 0.11 |
folC | 2747407 | c.192T>C | synonymous_variant | 0.12 |
folC | 2747439 | p.Met54Leu | missense_variant | 0.12 |
folC | 2747442 | c.157T>C | synonymous_variant | 0.12 |
folC | 2747443 | c.156G>A | synonymous_variant | 0.12 |
ribD | 2987369 | c.531G>A | synonymous_variant | 1.0 |
thyA | 3073975 | p.Arg166Pro | missense_variant | 1.0 |
Rv3236c | 3612013 | c.1104A>T | synonymous_variant | 1.0 |
Rv3236c | 3612032 | p.Met362Arg | missense_variant | 1.0 |
rpoA | 3877743 | c.765T>C | synonymous_variant | 0.12 |
rpoA | 3877764 | c.744C>G | synonymous_variant | 0.11 |
rpoA | 3877770 | c.738A>G | synonymous_variant | 0.12 |
rpoA | 3877776 | c.732T>C | synonymous_variant | 0.12 |
rpoA | 3877782 | c.726T>C | synonymous_variant | 0.12 |
rpoA | 3877839 | c.669G>C | synonymous_variant | 0.12 |
rpoA | 3877866 | c.642G>C | synonymous_variant | 0.12 |
rpoA | 3877872 | c.636C>T | synonymous_variant | 0.12 |
rpoA | 3877875 | c.633T>G | synonymous_variant | 0.12 |
rpoA | 3877905 | c.603A>G | synonymous_variant | 0.12 |
embC | 4240425 | p.Arg188Pro | missense_variant | 1.0 |
embC | 4240477 | c.615C>A | synonymous_variant | 1.0 |
embA | 4244214 | p.Ala328Ser | missense_variant | 1.0 |
embA | 4244849 | c.1617C>G | synonymous_variant | 1.0 |
embB | 4247198 | p.Thr229Pro | missense_variant | 1.0 |
embB | 4247381 | p.Trp290Arg | missense_variant | 0.9 |
embB | 4248044 | p.Lys511Ala | missense_variant | 0.12 |
embB | 4248052 | c.1539G>A | synonymous_variant | 0.13 |
embB | 4248055 | c.1542G>C | synonymous_variant | 0.12 |
embB | 4248064 | c.1551G>C | synonymous_variant | 0.12 |
embB | 4248070 | c.1557T>C | synonymous_variant | 0.11 |
embB | 4248097 | c.1584C>G | synonymous_variant | 0.11 |
embB | 4248118 | c.1605T>C | synonymous_variant | 0.12 |
embB | 4248127 | c.1614G>C | synonymous_variant | 0.14 |
embB | 4248133 | c.1620C>G | synonymous_variant | 0.14 |
aftB | 4268115 | p.Leu241Arg | missense_variant | 1.0 |
aftB | 4268696 | c.141G>A | synonymous_variant | 1.0 |
ethA | 4326298 | c.1176G>A | synonymous_variant | 1.0 |
whiB6 | 4338567 | c.-46C>A | upstream_gene_variant | 1.0 |