Run ID: SRR13837582
Sample name:
Date: 03-04-2023 09:13:40
Number of reads: 588299
Percentage reads mapped: 99.11
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5192 | c.-48C>G | upstream_gene_variant | 1.0 |
gyrA | 9658 | c.2357_2358insT | frameshift_variant | 1.0 |
fgd1 | 490779 | c.-4A>T | upstream_gene_variant | 1.0 |
rpoB | 760041 | p.Gly79Arg | missense_variant | 1.0 |
rpoB | 760652 | c.846C>A | synonymous_variant | 1.0 |
rpoB | 761122 | p.Pro439Arg | missense_variant | 1.0 |
mmpL5 | 775929 | p.Asn851Ile | missense_variant | 1.0 |
mmpS5 | 778941 | c.-36A>G | upstream_gene_variant | 1.0 |
embR | 1417376 | c.-29T>C | upstream_gene_variant | 1.0 |
rrl | 1473740 | n.83G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474574 | n.917A>T | non_coding_transcript_exon_variant | 1.0 |
rpsA | 1834610 | p.Arg357Gly | missense_variant | 1.0 |
ndh | 2101828 | c.1215C>T | synonymous_variant | 1.0 |
PPE35 | 2168706 | p.Ser636Phe | missense_variant | 1.0 |
pncA | 2289887 | c.-646A>C | upstream_gene_variant | 1.0 |
folC | 2746838 | p.Ala254Glu | missense_variant | 1.0 |
ribD | 2987500 | p.Gly221Asp | missense_variant | 1.0 |
thyX | 3068082 | c.-137T>C | upstream_gene_variant | 1.0 |
fbiD | 3338954 | c.-164A>G | upstream_gene_variant | 1.0 |
fbiD | 3339235 | p.Leu40Val | missense_variant | 1.0 |
fbiD | 3339406 | p.Thr97Ala | missense_variant | 1.0 |
Rv3083 | 3448625 | p.Leu41Gln | missense_variant | 1.0 |
fbiB | 3642247 | p.Asn238Thr | missense_variant | 1.0 |
fbiB | 3642283 | p.Glu250Ala | missense_variant | 1.0 |
clpC1 | 4039483 | c.1221_1222insC | frameshift_variant | 1.0 |
embA | 4243843 | c.613dupG | frameshift_variant | 1.0 |
embA | 4244833 | p.Val534Ala | missense_variant | 1.0 |
embA | 4245735 | p.Ala835Ser | missense_variant | 1.0 |
aftB | 4267994 | p.Met281Ile | missense_variant | 1.0 |