Run ID: SRR13837597
Sample name:
Date: 03-04-2023 09:14:02
Number of reads: 587650
Percentage reads mapped: 98.0
Strain: lineage4.9
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
embC | 4240748 | p.Tyr296His | missense_variant | 1.0 | ethambutol |
embB | 4247959 | p.Met482Ile | missense_variant | 1.0 | ethambutol |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
fgd1 | 491360 | p.Ile193Ser | missense_variant | 1.0 |
mshA | 576396 | p.Ser350Ile | missense_variant | 1.0 |
rpoB | 760225 | p.Glu140Ala | missense_variant | 1.0 |
rpoC | 767186 | p.Gln1273* | stop_gained | 1.0 |
mmpR5 | 779067 | p.Tyr26* | stop_gained | 1.0 |
rplC | 800933 | p.Pro42His | missense_variant | 1.0 |
fbiC | 1305306 | c.2376A>T | synonymous_variant | 1.0 |
tlyA | 1918560 | c.621G>T | synonymous_variant | 1.0 |
ndh | 2102402 | p.Leu214Arg | missense_variant | 1.0 |
katG | 2156175 | c.-64T>G | upstream_gene_variant | 1.0 |
PPE35 | 2169349 | p.Phe422Ile | missense_variant | 1.0 |
PPE35 | 2170540 | p.Leu25Val | missense_variant | 1.0 |
pncA | 2288999 | p.Phe81Leu | missense_variant | 1.0 |
fbiD | 3339660 | c.543C>G | synonymous_variant | 1.0 |
Rv3236c | 3612627 | p.Ala164Thr | missense_variant | 1.0 |
embA | 4244119 | p.Tyr296Phe | missense_variant | 1.0 |
embB | 4247417 | p.Tyr302Asn | missense_variant | 1.0 |
embB | 4248036 | p.Val508Gly | missense_variant | 1.0 |
embB | 4248325 | c.1812G>C | synonymous_variant | 1.0 |
aftB | 4267894 | p.Ile315Phe | missense_variant | 1.0 |
ethA | 4326052 | p.Asp474Glu | missense_variant | 1.0 |
ethA | 4327388 | p.Thr29Ile | missense_variant | 1.0 |
ethR | 4328162 | p.His205Pro | missense_variant | 1.0 |
whiB6 | 4338518 | c.4C>A | synonymous_variant | 1.0 |