lineage | Count |
---|---|
lineage4.9 | 25 |
89 | |
lineage2.2.1 | 5 |
lineage4.5 | 1 |
lineage4.9;La3 | 1 |
lineage9;lineage3.1 | 1 |
lineage2 | 2 |
lineage3;lineage2.2.1 | 1 |
lineage6.3;lineage2.2.1 | 1 |
lineage4.1.1 | 2 |
lineage4.1 | 1 |
lineage4.3.4.2.1 | 1 |
lineage4.3 | 1 |
lineage4 | 5 |
La1.8.1 | 1 |
lineage2.2 | 1 |
lineage3 | 2 |
lineage5.2 | 2 |
lineage1.1 | 1 |
La2 | 1 |
lineage4.1.2.1 | 3 |
La1 | 1 |
lineage4.3.2 | 1 |
lineage1.1.2 | 1 |
La3 | 1 |
spoligotype | Count |
---|---|
None | 151 |
ID | Drug resistance | Lineage | Country iso2 | SRR13861402 | Other | lineage4.9 | None | SRR13861427 | Other | lineage4.9 | None | SRR13861426 | Other | lineage4.9 | None | SRR1640750 | HR-TB | None | SRR15368973 | Other | None | SRR18003019 | Other | lineage2.2.1 | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR19304036 | HR-TB | None | SRR19303884 | HR-TB | None | SRR26399973 | Other | lineage4.9;La3 | None | SRR25827418 | Pre-XDR-TB | lineage9;lineage3.1 | None | SRR20969677 | HR-TB | lineage2 | None | SRR25827682 | Other | None | SRR25827497 | Pre-XDR-TB | lineage3;lineage2.2.1 | None | SRR26159043 | Other | lineage4.9 | None | SRR28119811 | Other | lineage6.3;lineage2.2.1 | None | ERR176793 | Other | lineage4.1.1 | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR6325445 | HR-TB | None | SRR3675465 | HR-TB | None | SRR3675482 | HR-TB | None | ERR161034 | Other | lineage4.3.4.2.1 | None | SRR3675234 | Other | None | SRR3675221 | HR-TB | None | SRR3675236 | HR-TB | None | SRR3675486 | HR-TB | None | ERR176643 | HR-TB | None | ERR176568 | Other | lineage4.3 | None | ERR176751 | HR-TB | None | SRR3675311 | Other | None | ERR212034 | HR-TB | None | SRR3675545 | HR-TB | None | ERR212001 | HR-TB | None | ERR2027263 | Other | lineage4 | None | ERR212033 | HR-TB | None | ERR212121 | HR-TB | None | SRR3675558 | HR-TB | None | SRR3675574 | HR-TB | None | ERR4818021 | Other | La1.8.1 | None | ERR4816585 | Other | lineage2.2 | None | SRR7496472 | Other | None | SRR3742665 | HR-TB | None | ERR2229143 | Other | lineage4.1.1 | None | ERR234659 | HR-TB | None | ERR3275196 | Other | lineage2.2.1 | nl | ERR2446563 | Other | lineage2.2.1 | nl | ERR4818394 | Other | lineage4.9 | None | ERR1035138 | MDR-TB | None | SRR5341302 | HR-TB | None | SRR6045503 | HR-TB | None | ERR2693239 | HR-TB | None | ERR2693231 | Other | None | ERR4821053 | Other | lineage3 | None | ERR2693230 | Other | None | ERR2693254 | Other | None | ERR2693257 | Other | None | ERR278594 | HR-TB | None | SRR6045526 | HR-TB | None | SRR6044890 | Other | lineage4.9 | None | SRR6045555 | HR-TB | None | SRR6044835 | Sensitive | lineage4 | None | SRR6046133 | HR-TB | None | SRR6044790 | HR-TB | None | SRR6045952 | HR-TB | None | SRR6046066 | HR-TB | None | SRR6045327 | HR-TB | None | SRR6325444 | HR-TB | None | SRR6325442 | HR-TB | None | SRR6046225 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6046514 | HR-TB | None | ERR502532 | HR-TB | None | ERR4872094 | MDR-TB | lineage5.2 | None | SRR6046540 | HR-TB | None | SRR6046594 | HR-TB | lineage4 | None | SRR6325447 | HR-TB | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR3077978 | Other | lineage1.1 | None | ERR502524 | HR-TB | La2 | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR323043 | HR-TB | None | ERR3283024 | Other | None | ERR3283013 | MDR-TB | lineage4 | None | ERR3283036 | HR-TB | None | ERR3283027 | HR-TB | None | ERR3283032 | HR-TB | None | ERR3797017 | Other | None | ERR3283051 | Other | lineage4.9 | None | ERR3797014 | Other | None | ERR3797043 | HR-TB | None | ERR3797069 | Other | None | ERR3797036 | HR-TB | None | ERR3797044 | Other | None | ERR3797058 | Other | lineage4.9 | None | ERR3797061 | Other | None | ERR4407463 | HR-TB | None | ERR4798262 | HR-TB | La1 | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4800341 | Other | lineage3 | None | ERR4811022 | HR-TB | None | ERR4810741 | HR-TB | None | ERR702406 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR5336148 | Other | None | ERR4811105 | HR-TB | None | ERR6358991 | HR-TB | None | ERR6359045 | HR-TB | None | ERR736835 | HR-TB | None | ERR736865 | HR-TB | None | ERR736874 | HR-TB | None | ERR736867 | HR-TB | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR9119500 | MDR-TB | lineage5.2 | None | SRR1167384 | Other | lineage4 | None | ERR9786843 | Other | None | ERR9787197 | Other | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | SRR1169249 | Other | La3 | None | SRR1169306 | Other | None | SRR1172817 | HR-TB | None | SRR1172234 | Other | None | SRR1172728 | MDR-TB | None | SRR1184294 | HR-TB | None | SRR1173629 | Other | None | SRR1173706 | Other | lineage4.9 | None | SRR1173778 | Other | None | SRR12142341 | HR-TB | None | SRR1184388 | Other | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1184381 | MDR-TB | None | SRR1184380 | HR-TB | None | SRR1196546 | HR-TB | None | SRR13837707 | Other | lineage4.9 | None | SRR13837484 | Other | lineage4.9 | None | SRR13837708 | Other | lineage4.9 | None | SRR12416824 | HR-TB | None | SRR13837595 | Other | lineage4.9 | None | SRR13837596 | Other | lineage4.9 | None | SRR13837597 | Other | lineage4.9 | None | SRR13837864 | Other | lineage4.9 | None | SRR13837967 | Other | lineage4.9 | None | SRR13837968 | Other | lineage4.9 | None | SRR13837969 | Other | lineage4.9 | None | SRR13861214 | Other | lineage4.9 | None | SRR13837970 | Other | lineage4.9 | None | SRR13837975 | Other | lineage4.9 | None | SRR13861256 | Other | lineage4.9 | None | SRR13861254 | Other | lineage4.9 | None | SRR13861255 | RR-TB | lineage4.9 | None |
---|