Run ID: SRR13837629
Sample name:
Date: 03-04-2023 09:14:44
Number of reads: 293892
Percentage reads mapped: 97.01
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
fgd1 | 490804 | p.Tyr8Asn | missense_variant | 1.0 |
fgd1 | 490893 | c.111C>T | synonymous_variant | 1.0 |
mshA | 575498 | p.Ala51Pro | missense_variant | 1.0 |
rpoC | 763663 | c.294C>A | synonymous_variant | 1.0 |
rpoC | 763955 | p.Lys196Gln | missense_variant | 1.0 |
rpoC | 765682 | p.Asn771Lys | missense_variant | 0.93 |
rpoC | 766342 | c.2973C>A | synonymous_variant | 1.0 |
rpsL | 781579 | p.Leu7Arg | missense_variant | 1.0 |
fbiC | 1304656 | p.Ala576Thr | missense_variant | 0.22 |
embR | 1416509 | p.Arg280Pro | missense_variant | 1.0 |
rrl | 1474164 | n.507C>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476425 | n.2768G>T | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.25 |
inhA | 1674315 | c.114C>G | synonymous_variant | 1.0 |
katG | 2154959 | c.1153C>A | synonymous_variant | 1.0 |
PPE35 | 2168306 | p.Phe769Leu | missense_variant | 0.22 |
PPE35 | 2170236 | c.376_377insG | frameshift_variant | 1.0 |
pncA | 2290061 | c.-820C>T | upstream_gene_variant | 1.0 |
folC | 2747798 | c.-200A>T | upstream_gene_variant | 1.0 |
pepQ | 2860252 | p.Thr56Ser | missense_variant | 1.0 |
Rv2752c | 3065651 | p.Arg181Gly | missense_variant | 1.0 |
Rv3083 | 3448855 | p.Val118Ile | missense_variant | 1.0 |
rpoA | 3877765 | p.Ala248Gly | missense_variant | 1.0 |
ddn | 3986847 | c.4_5insA | frameshift_variant | 1.0 |
embB | 4247059 | c.546C>G | synonymous_variant | 1.0 |
embB | 4247144 | p.Ser211Pro | missense_variant | 1.0 |
ubiA | 4269553 | p.Ala94Gly | missense_variant | 1.0 |
gid | 4408259 | c.-57G>C | upstream_gene_variant | 1.0 |