Run ID: SRR13837743
Sample name:
Date: 03-04-2023 09:17:27
Number of reads: 2938516
Percentage reads mapped: 96.01
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
rpsA | 1833851 | p.Lys104Gln | missense_variant | 1.0 |
Rv1979c | 2223241 | c.-77C>G | upstream_gene_variant | 1.0 |
pncA | 2289811 | c.-570C>T | upstream_gene_variant | 1.0 |
pncA | 2289994 | c.-753A>C | upstream_gene_variant | 1.0 |
kasA | 2518301 | p.His63Asp | missense_variant | 1.0 |
pepQ | 2859859 | p.Ala187Glu | missense_variant | 0.99 |
Rv2752c | 3064886 | p.Ala436Pro | missense_variant | 1.0 |
Rv2752c | 3065258 | p.Met312Val | missense_variant | 1.0 |
Rv3083 | 3449104 | p.Pro201Ala | missense_variant | 1.0 |
Rv3236c | 3612337 | c.779delG | frameshift_variant | 1.0 |
fbiB | 3641723 | c.189T>C | synonymous_variant | 1.0 |
rpoA | 3877740 | c.768G>T | synonymous_variant | 1.0 |
embC | 4241005 | c.1143G>T | synonymous_variant | 1.0 |
embC | 4241081 | c.1220delT | frameshift_variant | 1.0 |
embC | 4242746 | p.Pro962Ser | missense_variant | 1.0 |
embA | 4243969 | p.Val246Ala | missense_variant | 1.0 |