Run ID: SRR13837879
Sample name:
Date: 03-04-2023 09:20:55
Number of reads: 1473870
Percentage reads mapped: 95.31
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6667 | p.Gln476His | missense_variant | 0.97 |
gyrA | 7289 | c.-13_-12insT | upstream_gene_variant | 1.0 |
rpoB | 760214 | p.Asn136Lys | missense_variant | 1.0 |
fbiC | 1304005 | p.Pro359Ser | missense_variant | 1.0 |
rrs | 1471943 | n.98T>C | non_coding_transcript_exon_variant | 0.98 |
rrs | 1472075 | n.230A>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473066 | n.1221A>T | non_coding_transcript_exon_variant | 0.95 |
rrs | 1473370 | n.1525T>C | non_coding_transcript_exon_variant | 0.97 |
rrl | 1473815 | n.158T>G | non_coding_transcript_exon_variant | 0.11 |
rrl | 1474760 | n.1103A>G | non_coding_transcript_exon_variant | 0.12 |
fabG1 | 1673813 | p.Arg125Leu | missense_variant | 1.0 |
inhA | 1674784 | p.Arg195Gly | missense_variant | 1.0 |
ndh | 2101793 | p.Trp417* | stop_gained | 1.0 |
PPE35 | 2169624 | p.Gly330Asp | missense_variant | 1.0 |
kasA | 2519223 | p.Thr370Ile | missense_variant | 1.0 |
ahpC | 2726213 | c.21C>T | synonymous_variant | 1.0 |
ribD | 2987016 | p.Gly60Arg | missense_variant | 1.0 |
Rv2752c | 3065644 | p.Thr183Ser | missense_variant | 1.0 |
thyA | 3074595 | c.-124C>A | upstream_gene_variant | 0.98 |
alr | 3841581 | c.-161T>A | upstream_gene_variant | 1.0 |
embC | 4242810 | p.Leu983Gln | missense_variant | 1.0 |
embB | 4246553 | p.Arg14Trp | missense_variant | 1.0 |
embB | 4248920 | p.Val803Met | missense_variant | 1.0 |
embB | 4249551 | p.Arg1013Leu | missense_variant | 1.0 |
ethA | 4326296 | p.Leu393Gln | missense_variant | 1.0 |