TB-Profiler result

Run: SRR13837918
Summary

Run ID: SRR13837918

Sample name:

Date: 03-04-2023 09:21:56

Number of reads: 1469044

Percentage reads mapped: 100.0

Strain: lineage4.9

Drug-resistance: Sensitive

Download CSV Download TXT Download PDF Download JSON
Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 9490 p.Gly730Asp missense_variant 1.0
fgd1 491231 p.Phe150Tyr missense_variant 1.0
rpoC 766128 p.Ala920Gly missense_variant 1.0
rpsL 781503 c.-57T>C upstream_gene_variant 1.0
fbiC 1303099 c.170dupA frameshift_variant 1.0
fbiC 1304043 c.1116delC frameshift_variant 1.0
Rv1258c 1406861 p.Ile160Met missense_variant 1.0
Rv1258c 1407463 c.-123G>C upstream_gene_variant 1.0
rrs 1472303 n.458G>A non_coding_transcript_exon_variant 1.0
rrl 1474235 n.578G>T non_coding_transcript_exon_variant 1.0
rrl 1475139 n.1482C>T non_coding_transcript_exon_variant 1.0
rrl 1476248 n.2591G>A non_coding_transcript_exon_variant 1.0
rrl 1476576 n.2919C>G non_coding_transcript_exon_variant 1.0
kasA 2518209 p.Thr32Arg missense_variant 1.0
folC 2746788 p.Ala271Pro missense_variant 1.0
thyX 3067214 p.Ser244Arg missense_variant 1.0
fbiD 3339396 c.279C>T synonymous_variant 1.0
rpoA 3878048 p.Ala154Ser missense_variant 1.0
embB 4248368 p.Leu619Val missense_variant 1.0
ethA 4327082 p.Cys131Ser missense_variant 0.98
ethA 4327097 p.Leu126His missense_variant 1.0
gid 4407792 c.411G>C synonymous_variant 1.0