Run ID: SRR13837972
Sample name:
Date: 03-04-2023 09:23:20
Number of reads: 1473718
Percentage reads mapped: 95.3
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
rpoC | 762698 | c.-672C>T | upstream_gene_variant | 1.0 |
rpoB | 762958 | p.Leu1051Pro | missense_variant | 0.98 |
rpoC | 767044 | c.3675G>C | synonymous_variant | 0.11 |
rpoC | 767080 | c.3711G>C | synonymous_variant | 0.12 |
rpoC | 767098 | c.3729T>C | synonymous_variant | 0.12 |
rpoC | 767119 | c.3750A>G | synonymous_variant | 0.13 |
rpoC | 767125 | c.3756G>C | synonymous_variant | 0.13 |
rpoC | 767138 | c.3769C>T | synonymous_variant | 0.12 |
rpoC | 767149 | c.3780C>T | synonymous_variant | 0.11 |
rpoC | 767158 | c.3789T>C | synonymous_variant | 0.11 |
fbiC | 1302962 | p.Ala11Gly | missense_variant | 1.0 |
fbiC | 1303706 | p.Leu259Arg | missense_variant | 1.0 |
fbiC | 1305384 | c.2454G>T | synonymous_variant | 1.0 |
Rv1258c | 1406724 | p.Gln206Leu | missense_variant | 1.0 |
embR | 1416800 | p.Ala183Gly | missense_variant | 1.0 |
fabG1 | 1673153 | c.-287C>G | upstream_gene_variant | 1.0 |
rpsA | 1833555 | p.Thr5Ser | missense_variant | 1.0 |
rpsA | 1834073 | p.Lys178* | stop_gained | 1.0 |
PPE35 | 2167669 | p.Phe982Leu | missense_variant | 1.0 |
Rv2752c | 3066234 | c.-43G>A | upstream_gene_variant | 1.0 |
fbiB | 3642276 | c.743delC | frameshift_variant | 1.0 |
rpoA | 3878111 | p.Lys133Gln | missense_variant | 0.98 |
embA | 4242703 | c.-530C>T | upstream_gene_variant | 1.0 |
embB | 4249144 | c.2631G>C | synonymous_variant | 1.0 |