Run ID: SRR13861602
Sample name:
Date: 03-04-2023 09:35:53
Number of reads: 1136318
Percentage reads mapped: 22.75
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 8827 | p.Asp509Gly | missense_variant | 1.0 |
mmpR5 | 779201 | p.Ala71Val | missense_variant | 1.0 |
fbiC | 1305062 | p.Gly711Glu | missense_variant | 1.0 |
rrs | 1472361 | n.516C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475981 | n.2324G>A | non_coding_transcript_exon_variant | 1.0 |
rpsA | 1834620 | p.Leu360Ser | missense_variant | 1.0 |
tlyA | 1918366 | p.Ala143Pro | missense_variant | 1.0 |
ndh | 2101701 | c.1341delG | frameshift_variant | 1.0 |
PPE35 | 2170109 | c.504C>T | synonymous_variant | 1.0 |
kasA | 2518676 | p.Gly188Cys | missense_variant | 1.0 |
eis | 2714749 | p.Val195Ala | missense_variant | 0.97 |
eis | 2715045 | c.288G>A | synonymous_variant | 1.0 |
Rv2752c | 3067080 | c.-889G>C | upstream_gene_variant | 1.0 |
clpC1 | 4039055 | p.Ile550Met | missense_variant | 1.0 |
embC | 4242797 | p.Asp979His | missense_variant | 1.0 |
embB | 4247936 | p.Thr475Ala | missense_variant | 1.0 |