TB-Profiler result

Run: SRR13861681
Summary

Run ID: SRR13861681

Sample name:

Date: 03-04-2023 09:37:53

Number of reads: 464372

Percentage reads mapped: 46.48

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
rrs 1472240 n.395G>A non_coding_transcript_exon_variant 1.0
rpsA 1833449 c.-93G>T upstream_gene_variant 1.0
PPE35 2168966 c.1647G>C synonymous_variant 1.0
PPE35 2170688 c.-76G>A upstream_gene_variant 1.0
Rv1979c 2222009 p.Phe386Ile missense_variant 1.0
kasA 2519254 c.1140_1141insA frameshift_variant 1.0
ahpC 2726279 p.Lys29Asn missense_variant 1.0
thyA 3074493 c.-22C>T upstream_gene_variant 1.0
whiB7 3568433 p.Arg83Cys missense_variant 1.0
clpC1 4038485 c.2220C>T synonymous_variant 1.0
embB 4248644 p.Ala711Pro missense_variant 1.0
aftB 4267225 p.Ile538Phe missense_variant 1.0
ubiA 4269050 p.Tyr262Asp missense_variant 1.0
ethR 4327699 p.Ala51Ser missense_variant 1.0
ethA 4328373 c.-900A>G upstream_gene_variant 1.0