Rv3854c - c.-900A>G
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
16 Sensitive
0 RR-TB
91 HR-TB
7 MDR-TB
0 Pre-XDR-TB
0 XDR-TB
4 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 95 |
| lineage2.2.1;lineage4 | 1 |
| lineage4.9 | 18 |
| lineage2.2.1;lineage4.3.3 | 1 |
| lineage2.2.1;lineage4.3.2 | 1 |
| lineage4.8 | 2 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 118 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR13260255 | HR-TB | lineage2.2.1 | None | ERR13260583 | HR-TB | lineage2.2.1 | None | ERR13261700 | HR-TB | lineage2.2.1 | None | ERR13260323 | MDR-TB | lineage2.2.1 | None | ERR13260349 | HR-TB | lineage2.2.1;lineage4 | None | ERR13260601 | HR-TB | lineage2.2.1 | None | ERR13260360 | HR-TB | lineage2.2.1 | None | SRR13861463 | Other | lineage4.9 | None | SRR13837515 | Sensitive | lineage4.9 | None | SRR13837887 | Sensitive | lineage4.9 | None | ERR13261672 | HR-TB | lineage2.2.1 | None | ERR13260377 | HR-TB | lineage2.2.1 | None | SRR13861656 | Sensitive | lineage4.9 | None | SRR13861682 | Sensitive | lineage4.9 | None | ERR13261685 | HR-TB | lineage2.2.1 | None | ERR13260520 | HR-TB | lineage2.2.1 | None | ERR13260262 | HR-TB | lineage2.2.1 | None | ERR13260350 | HR-TB | lineage2.2.1 | None | ERR13260372 | HR-TB | lineage2.2.1 | None | ERR13261701 | HR-TB | lineage2.2.1 | None | ERR13260620 | HR-TB | lineage2.2.1 | None | ERR13260274 | HR-TB | lineage2.2.1 | None | ERR4813631 | HR-TB | lineage2.2.1 | None | ERR13260336 | HR-TB | lineage2.2.1 | None | ERR13260307 | HR-TB | lineage2.2.1 | None | SRR13838002 | Sensitive | lineage4.9 | None | ERR13260384 | HR-TB | lineage2.2.1 | None | ERR13260309 | HR-TB | lineage2.2.1 | None | SRR13837888 | Sensitive | lineage4.9 | None | ERR13260251 | HR-TB | lineage2.2.1 | None | ERR13260586 | HR-TB | lineage2.2.1 | None | ERR13260605 | HR-TB | lineage2.2.1 | None | ERR13260609 | HR-TB | lineage2.2.1 | None | ERR13260363 | MDR-TB | lineage2.2.1 | None | ERR13260327 | HR-TB | lineage2.2.1 | None | ERR13260283 | HR-TB | lineage2.2.1 | None | ERR13260514 | HR-TB | lineage2.2.1 | None | ERR13260622 | HR-TB | lineage2.2.1 | None | ERR13260338 | HR-TB | lineage2.2.1 | None | ERR13260331 | HR-TB | lineage2.2.1 | None | ERR13260359 | HR-TB | lineage2.2.1 | None | ERR13261869 | MDR-TB | lineage2.2.1;lineage4.3.3 | None | ERR13260370 | HR-TB | lineage2.2.1 | None | ERR13260506 | MDR-TB | lineage2.2.1 | None | SRR13837517 | Sensitive | lineage4.9 | None | SRR13838005 | Sensitive | lineage4.9 | None | ERR13260328 | HR-TB | lineage2.2.1 | None | ERR13260320 | HR-TB | lineage2.2.1 | None | ERR13260285 | HR-TB | lineage2.2.1 | None | ERR13260582 | HR-TB | lineage2.2.1 | None | ERR13260606 | HR-TB | lineage2.2.1 | None | ERR13260264 | HR-TB | lineage2.2.1 | None | ERR13261691 | HR-TB | lineage2.2.1 | None | ERR13260292 | HR-TB | lineage2.2.1 | None | ERR13260507 | HR-TB | lineage2.2.1 | None | ERR13260600 | HR-TB | lineage2.2.1 | None | ERR13260627 | HR-TB | lineage2.2.1 | None | ERR13260358 | HR-TB | lineage2.2.1 | None | ERR13260612 | HR-TB | lineage2.2.1 | None | ERR13260273 | HR-TB | lineage2.2.1 | None | SRR13861466 | Sensitive | lineage4.9 | None | ERR13260332 | HR-TB | lineage2.2.1 | None | ERR13260261 | HR-TB | lineage2.2.1 | None | ERR13260629 | HR-TB | lineage2.2.1 | None | ERR13260369 | HR-TB | lineage2.2.1 | None | ERR13260268 | HR-TB | lineage2.2.1 | None | ERR13260311 | HR-TB | lineage2.2.1;lineage4.3.2 | None | ERR13260351 | HR-TB | lineage2.2.1 | None | ERR13260608 | HR-TB | lineage2.2.1 | None | SRR13838003 | Sensitive | lineage4.9 | None | ERR4813428 | HR-TB | lineage2.2.1 | pe | ERR4813310 | HR-TB | lineage2.2.1 | pe | SRR13838004 | Sensitive | lineage4.9 | None | ERR13260382 | HR-TB | lineage2.2.1 | None | ERR4813669 | HR-TB | lineage2.2.1 | None | ERR13260275 | MDR-TB | lineage2.2.1 | None | ERR13260324 | HR-TB | lineage2.2.1 | None | SRR13837516 | Sensitive | lineage4.9 | None | ERR4813593 | HR-TB | lineage2.2.1 | None | SRR13861681 | Sensitive | lineage4.9 | None | SRR13861683 | Other | lineage4.9 | None | ERR13260299 | HR-TB | lineage2.2.1 | None | ERR13261689 | HR-TB | lineage2.2.1 | None | ERR4813690 | HR-TB | lineage2.2.1 | None | ERR13260355 | HR-TB | lineage2.2.1 | None | ERR13260217 | HR-TB | lineage2.2.1 | None | ERR13260383 | HR-TB | lineage2.2.1 | None | ERR13260346 | HR-TB | lineage2.2.1 | None | ERR13260368 | HR-TB | lineage2.2.1 | None | ERR13260296 | HR-TB | lineage2.2.1 | None | ERR13260367 | HR-TB | lineage2.2.1 | None | ERR13261655 | HR-TB | lineage2.2.1 | None | ERR13261870 | HR-TB | lineage2.2.1 | None | ERR13260361 | HR-TB | lineage2.2.1 | None | ERR13260289 | HR-TB | lineage2.2.1 | None | ERR13261690 | HR-TB | lineage2.2.1 | None | ERR13260300 | HR-TB | lineage2.2.1 | None | ERR13260297 | HR-TB | lineage2.2.1 | None | SRR13861464 | Other | lineage4.9 | None | ERR13260263 | HR-TB | lineage2.2.1 | None | ERR13260549 | HR-TB | lineage2.2.1 | None | ERR13260657 | MDR-TB | lineage2.2.1 | None | ERR13260325 | HR-TB | lineage2.2.1 | None | ERR4820119 | Sensitive | lineage4.8 | None | ERR13260618 | HR-TB | lineage2.2.1 | None | ERR13260216 | HR-TB | lineage2.2.1 | None | SRR13838001 | Sensitive | lineage4.9 | None | ERR13260347 | HR-TB | lineage2.2.1 | None | ERR13260326 | HR-TB | lineage2.2.1 | None | ERR13260353 | MDR-TB | lineage2.2.1 | None | ERR4818067 | Sensitive | lineage4.8 | None | ERR13260584 | HR-TB | lineage2.2.1 | None | ERR4813665 | HR-TB | lineage2.2.1 | None | ERR4813045 | HR-TB | lineage2.2.1 | pe | ERR4812808 | HR-TB | lineage2.2.1 | None | ERR4813080 | HR-TB | lineage2.2.1 | pe | ERR4813652 | HR-TB | lineage2.2.1 | None | SRR13861465 | Other | lineage4.9 | None |
|---|
