Run ID: SRR16962454
Sample name:
Date: 03-04-2023 17:47:52
Number of reads: 919427
Percentage reads mapped: 99.67
Strain: lineage4.8
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5472 | p.Ala78Val | missense_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
atpE | 1460992 | c.-53A>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1471893 | n.48T>C | non_coding_transcript_exon_variant | 0.11 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
folC | 2747409 | p.Tyr64Asn | missense_variant | 0.12 |
pepQ | 2860238 | p.Arg61Ser | missense_variant | 0.11 |
fbiD | 3339734 | p.Ala206Gly | missense_variant | 0.33 |
alr | 3840764 | c.657G>C | synonymous_variant | 1.0 |
clpC1 | 4040282 | c.423G>A | synonymous_variant | 1.0 |
embC | 4241411 | p.Ile517Val | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4245411 | p.Ser727Gly | missense_variant | 0.1 |
embB | 4246584 | p.Arg24Pro | missense_variant | 0.33 |
embB | 4247183 | p.Gly224Arg | missense_variant | 0.11 |
aftB | 4267318 | p.Gln507* | stop_gained | 0.11 |
ethA | 4328059 | c.-586G>A | upstream_gene_variant | 0.12 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
Rv3083 | 3448507 | c.5_*1408del | frameshift_variant&stop_lost&splice_region_variant | 1.0 |