Run ID: SRR18912064
Sample name:
Date: 03-04-2023 20:48:12
Number of reads: 681219
Percentage reads mapped: 99.53
Strain: lineage4.3.2
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.3 | Euro-American (LAM) | mainly-LAM | None | 1.0 |
lineage4.3.2 | Euro-American (LAM) | LAM3 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6495 | p.Ala419Val | missense_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8057 | c.756A>G | synonymous_variant | 0.12 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491494 | p.Asp238Asn | missense_variant | 0.13 |
rpoB | 760709 | p.Asp301Glu | missense_variant | 0.11 |
rpoC | 764995 | c.1626C>G | synonymous_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
embR | 1417317 | p.Leu11Ile | missense_variant | 0.1 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472337 | n.492C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473273 | n.1428G>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474197 | n.540C>T | non_coding_transcript_exon_variant | 0.11 |
rrl | 1474625 | n.968T>A | non_coding_transcript_exon_variant | 0.15 |
rpsA | 1833435 | c.-107G>A | upstream_gene_variant | 0.1 |
rpsA | 1834701 | c.1163delG | frameshift_variant | 0.12 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2519041 | c.927C>T | synonymous_variant | 0.15 |
folC | 2746628 | p.Asp324Val | missense_variant | 0.11 |
folC | 2747530 | c.69G>A | synonymous_variant | 0.12 |
folC | 2747579 | p.Gly7Val | missense_variant | 0.11 |
thyA | 3073868 | p.Thr202Ala | missense_variant | 0.89 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
Rv3083 | 3448479 | c.-25G>T | upstream_gene_variant | 0.11 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474946 | p.Pro314Ala | missense_variant | 0.12 |
whiB7 | 3568834 | c.-155G>A | upstream_gene_variant | 0.12 |
Rv3236c | 3612701 | p.Asp139Gly | missense_variant | 0.11 |
fbiA | 3640371 | c.-172G>T | upstream_gene_variant | 1.0 |
clpC1 | 4038287 | c.2418C>T | synonymous_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4244820 | p.Gly530Trp | missense_variant | 0.12 |
embA | 4244839 | c.1613_1641delGCGGCCGGGTGGCGGGGCTGGCCAGCGGC | frameshift_variant | 0.12 |
embB | 4248103 | c.1590G>T | synonymous_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4408156 | p.Leu16Arg | missense_variant | 1.0 |