Run ID: SRR19233762
Sample name:
Date: 03-04-2023 21:00:17
Number of reads: 2532562
Percentage reads mapped: 99.54
Strain: lineage4.1.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 1.0 |
lineage4.1.1 | Euro-American (X-type) | X1;X2;X3 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
mshA | 576751 | p.Lys468Asn | missense_variant | 0.25 |
rpoB | 760493 | c.687C>A | synonymous_variant | 1.0 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
rpoC | 766070 | c.2701C>T | synonymous_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472412 | n.567A>G | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472435 | n.590T>C | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472438 | n.593T>C | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472439 | n.594C>T | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472447 | n.602C>T | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472448 | n.603T>C | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472450 | n.605A>G | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472451 | n.606C>G | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472461 | n.616G>C | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472462 | n.617T>C | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472464 | n.619A>G | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472471 | n.626G>A | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472489 | n.644A>T | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472498 | n.653C>T | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472504 | n.659A>T | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472505 | n.660G>A | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472523 | n.678A>G | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472558 | n.713G>A | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472569 | n.724G>A | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472573 | n.728C>T | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472574 | n.729T>A | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472584 | n.739A>T | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472607 | n.762G>A | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472612 | n.767G>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1474170 | n.513G>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1475698 | n.2041G>T | non_coding_transcript_exon_variant | 0.25 |
inhA | 1674616 | p.Asn139Tyr | missense_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 0.99 |
ald | 3086987 | p.Gln56His | missense_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fbiA | 3641447 | p.Thr302Met | missense_variant | 1.0 |
rpoA | 3877553 | p.Glu319Lys | missense_variant | 1.0 |
embC | 4240897 | c.1035C>G | synonymous_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
embB | 4249408 | c.2895G>A | synonymous_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |