Run ID: SRR19303914
Sample name:
Date: 03-04-2023 21:13:29
Number of reads: 3610042
Percentage reads mapped: 98.97
Strain: lineage4.5
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.5 | Euro-American | H;T | RD122 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 7892 | c.591G>A | synonymous_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
ccsA | 620029 | c.139C>T | synonymous_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1304463 | c.1533C>T | synonymous_variant | 1.0 |
Rv1258c | 1406101 | p.Pro414Ser | missense_variant | 1.0 |
Rv1258c | 1406899 | p.Ala148Thr | missense_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472189 | n.344C>A | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472860 | n.1015C>A | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474537 | n.880G>A | non_coding_transcript_exon_variant | 0.4 |
rrl | 1474540 | n.883T>C | non_coding_transcript_exon_variant | 0.4 |
rrl | 1474542 | n.885A>G | non_coding_transcript_exon_variant | 0.4 |
rrl | 1474551 | n.894G>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474552 | n.895C>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474555 | n.898T>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474558 | n.901G>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474581 | n.924C>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1474629 | n.972G>A | non_coding_transcript_exon_variant | 0.4 |
rrl | 1475960 | n.2303C>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476359 | n.2702C>A | non_coding_transcript_exon_variant | 0.12 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2102283 | p.Arg254Cys | missense_variant | 1.0 |
PPE35 | 2170568 | p.Ile15Met | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
Rv2752c | 3065643 | c.549C>T | synonymous_variant | 0.98 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
rpoA | 3878575 | c.-68C>T | upstream_gene_variant | 1.0 |
clpC1 | 4038318 | p.Pro796Leu | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |