Run ID: SRR2101457
Sample name:
Date: 03-04-2023 23:43:46
Number of reads: 287821
Percentage reads mapped: 99.84
Strain: lineage4.8.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 1.0 |
lineage4.8.1 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 0.15 |
fgd1 | 491292 | c.510G>T | synonymous_variant | 0.12 |
mshA | 576457 | c.1110G>T | synonymous_variant | 0.22 |
rpoB | 760933 | p.Gly376Val | missense_variant | 0.1 |
rpoB | 762297 | c.2491C>T | synonymous_variant | 0.12 |
rpoC | 766736 | p.Arg1123Trp | missense_variant | 0.15 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 778018 | p.Gly155Ser | missense_variant | 0.11 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1303552 | p.Ala208Thr | missense_variant | 0.14 |
fbiC | 1303634 | p.Asp235Gly | missense_variant | 0.17 |
embR | 1416371 | p.Ser326Ile | missense_variant | 0.12 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1473346 | n.1501G>T | non_coding_transcript_exon_variant | 0.1 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474478 | n.821C>A | non_coding_transcript_exon_variant | 0.11 |
fabG1 | 1673318 | c.-122C>G | upstream_gene_variant | 0.12 |
rpsA | 1833968 | p.Gly143Trp | missense_variant | 0.13 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
tlyA | 1918485 | p.Lys182Asn | missense_variant | 0.15 |
katG | 2153941 | p.Phe724Cys | missense_variant | 0.15 |
PPE35 | 2168149 | p.Pro822Ser | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2288937 | p.Ala102Val | missense_variant | 0.18 |
Rv2752c | 3067091 | c.-900C>A | upstream_gene_variant | 0.12 |
fbiD | 3339040 | c.-78T>C | upstream_gene_variant | 1.0 |
fbiB | 3641958 | p.Val142Ile | missense_variant | 0.18 |
fbiB | 3642874 | p.Leu447Arg | missense_variant | 1.0 |
alr | 3840544 | p.Val293Leu | missense_variant | 0.11 |
alr | 3841612 | c.-193_-192insC | upstream_gene_variant | 0.13 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4248992 | p.Asn827Tyr | missense_variant | 0.15 |
aftB | 4268629 | p.Gly70Cys | missense_variant | 0.22 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
Rv3083 | 3448507 | c.5_*1408del | frameshift_variant&stop_lost&splice_region_variant | 1.0 |