SRR10315661
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR16058309
|
HR-TB
|
lineage4.8.1
|
None
|
SRR4033218
|
Sensitive
|
lineage4.8.1
|
None
|
ERR10610354
|
Sensitive
|
lineage4.8.1
|
None
|
ERR11488619
|
MDR-TB
|
lineage4.8.1
|
None
|
ERR552809
|
Pre-XDR-TB
|
lineage4.8.1
|
sz
|
ERR046778
|
HR-TB
|
lineage4.8.1
|
gb
|
ERR11465041
|
Sensitive
|
lineage4.8.1
|
None
|
SRR1167347
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR6855693
|
Sensitive
|
lineage4.8.1
|
None
|
SAMN02586029
|
MDR-TB
|
lineage4.8.1
|
za
|
SRR4033255
|
Sensitive
|
lineage4.8.1
|
za
|
ERR11466152
|
Sensitive
|
lineage4.8.1
|
None
|
SRR1196475
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR11342663
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR4033287
|
Sensitive
|
lineage4.8.1
|
None
|
ERR11465503
|
Sensitive
|
lineage4.8.1
|
None
|
ERR551324
|
Sensitive
|
lineage4.8.1
|
None
|
SRR28859645
|
HR-TB
|
lineage4.8.1
|
None
|
SRR16058668
|
Sensitive
|
M.canetti
|
None
|
SRR4033256
|
Sensitive
|
lineage4.8.1
|
za
|
ERR7801160
|
Sensitive
|
lineage4.8.1
|
None
|
ERR11465954
|
Sensitive
|
lineage4.8.1;lineage4.9
|
None
|
ERR8774452
|
RR-TB
|
lineage4.8.1
|
None
|
SRR9971373
|
MDR-TB
|
lineage4.8.1
|
None
|
ERR7911716
|
Sensitive
|
lineage4.8.1
|
za
|
SRR2101457
|
Sensitive
|
lineage4.8.1
|
None
|
SRR10869288
|
Sensitive
|
lineage4.8.1
|
None
|
SRR1173271
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR5818614
|
Sensitive
|
M.canetti
|
dj
|
SRR10315662
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR832986
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR4033222
|
Sensitive
|
lineage4.8.1
|
za
|
ERR11465850
|
Sensitive
|
lineage4.8.1
|
None
|
SRR9971070
|
MDR-TB
|
lineage4.8.1
|
None
|
ERR7801159
|
Sensitive
|
lineage4.8.1
|
None
|
ERR8686211
|
Sensitive
|
lineage4.8.1
|
None
|
ERR2514245
|
Sensitive
|
lineage4.8.1
|
gb
|
ERR2984795
|
Other
|
lineage4.8.1
|
None
|
ERR11465517
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR11349198
|
MDR-TB
|
lineage4.8.1
|
None
|
ERR2515698
|
Sensitive
|
lineage4.8.1
|
za
|
ERR11466413
|
Sensitive
|
lineage4.8.1
|
None
|
SRR1165680
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR14520058
|
Sensitive
|
lineage4.8.1
|
None
|
SRR21277049
|
Sensitive
|
lineage4.5
|
None
|
ERR9125425
|
HR-TB
|
lineage4.8.1
|
None
|
SRR1169163
|
MDR-TB
|
lineage4.8.1
|
None
|
ERR4830526
|
MDR-TB
|
lineage4.8.1
|
za
|
ERR11465231
|
Sensitive
|
lineage4.8.1
|
None
|
ERR266108
|
Sensitive
|
M.canetti
|
None
|
SRR4033223
|
Sensitive
|
lineage4.8.1
|
za
|
ERR9907780
|
MDR-TB
|
lineage4.8.1
|
None
|
ERR2984784
|
Sensitive
|
lineage4.8.1
|
None
|
SAMN02403585
|
MDR-TB
|
lineage4.8.1
|
za
|
ERR2516370
|
Sensitive
|
lineage4.8.1
|
be
|
SRR1184377
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR1169250
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR1019137
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR1172141
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR1180417
|
Sensitive
|
lineage4.8.1
|
None
|
SRR6896227
|
Sensitive
|
lineage4.8.1
|
None
|
SRR1169255
|
Sensitive
|
lineage4.8.1
|
None
|
ERR313115
|
Other
|
M.canetti
|
None
|
ERR11775822
|
Sensitive
|
lineage4.8.1
|
None
|
SRR4033215
|
Sensitive
|
lineage4.8.1
|
None
|
ERR9125480
|
Sensitive
|
M.canetti
|
None
|
ERR11466258
|
Sensitive
|
lineage4.7;lineage4.8.1
|
None
|
SRR2101618
|
Sensitive
|
lineage4.8.1
|
None
|
ERR7801282
|
Sensitive
|
lineage4.8.1
|
None
|
SRR6855681
|
Sensitive
|
lineage3.1.1;lineage4.8.1
|
None
|
SRR4033258
|
Sensitive
|
lineage4.8.1
|
None
|
SRR7069008
|
Sensitive
|
lineage4.8.1
|
None
|
ERR7801239
|
Sensitive
|
lineage4.8.1
|
None
|
SRR1169315
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR1173120
|
Pre-XDR-TB
|
lineage4.8.1
|
None
|
SRR1196517
|
MDR-TB
|
lineage4.8.1
|
None
|
ERR4830482
|
RR-TB
|
lineage4.8.1
|
za
|
SRR6982410
|
Sensitive
|
lineage4.8.1
|
None
|
ERR6358762
|
MDR-TB
|
lineage4.6.1.2;lineage4.8.1
|
None
|
SRR4033250
|
Sensitive
|
lineage4.8.1
|
za
|
SRR18289196
|
Sensitive
|
M.canetti
|
None
|
ERR10748323
|
MDR-TB
|
lineage4.8.1
|
None
|
ERR11050117
|
Sensitive
|
lineage4.8.1
|
None
|
ERR3276068
|
Sensitive
|
lineage4.8.1
|
nl
|
SRR5818653
|
Sensitive
|
M.canetti
|
dj
|
ERR9907742
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR4033232
|
Sensitive
|
lineage4.8.1
|
za
|
SRR2100226
|
RR-TB
|
lineage4.8.1
|
None
|
SRR6855674
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR4033221
|
Sensitive
|
lineage4.8.1
|
za
|
ERR4814978
|
Sensitive
|
lineage4.8.1
|
gb
|
SRR7070087
|
Other
|
lineage4.8.1
|
None
|
ERR11488519
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR833188
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR4033288
|
Sensitive
|
lineage4.8.1
|
za
|
SRR4033242
|
Sensitive
|
lineage4.8.1
|
None
|
ERR7451300
|
Sensitive
|
M.canetti
|
None
|
ERR2513653
|
Sensitive
|
lineage4.8.1
|
gb
|
SRR6982498
|
Sensitive
|
lineage4.8.1
|
None
|
SRR1165696
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR4033244
|
Sensitive
|
lineage4.8.1
|
za
|
ERR7801238
|
Sensitive
|
lineage4.8.1
|
None
|
SRR1165718
|
MDR-TB
|
lineage4.8.1
|
None
|
ERR13289349
|
HR-TB
|
lineage4.8.1
|
None
|
SRR6045729
|
Sensitive
|
lineage4.8.1
|
gb
|
ERR11811447
|
Sensitive
|
lineage4.8.1
|
None
|
SRR1167283
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR1173328
|
MDR-TB
|
lineage4.8.1
|
None
|
ERR4817618
|
Sensitive
|
lineage4.8.1
|
None
|
SRR4033251
|
Sensitive
|
lineage4.8.1
|
za
|
SRR11349134
|
Pre-XDR-TB
|
lineage4.8.1
|
None
|
ERR7451301
|
Sensitive
|
M.canetti
|
None
|
SRR6856023
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR24256371
|
Sensitive
|
lineage4.8.1
|
None
|
ERR4809299
|
MDR-TB
|
lineage4.8.1
|
za
|
SRR22048317
|
Other
|
lineage4.8.1
|
None
|
SRR29055928
|
MDR-TB
|
lineage4.8.1
|
None
|
ERR11465239
|
Sensitive
|
lineage4.8.1
|
None
|
SRR2101699
|
Sensitive
|
lineage4.8.1
|
None
|
ERR10748114
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.8.1
|
None
|
ERR2515500
|
Sensitive
|
lineage4.8.1
|
za
|
SAMN02403596
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR4033293
|
Sensitive
|
lineage4.8.1
|
None
|
SRR2101569
|
Sensitive
|
lineage4.8.1
|
None
|
SRR2101729
|
Sensitive
|
lineage4.8.1
|
None
|
ERR8975393
|
Sensitive
|
lineage4.8.1
|
None
|
ERR8976018
|
Sensitive
|
lineage4.8.1
|
None
|
SAMN02403528
|
MDR-TB
|
lineage4.8.1
|
za
|
SRR11342694
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR4033233
|
Sensitive
|
lineage4.8.1
|
za
|
SRR9971244
|
RR-TB
|
lineage4.8.1
|
None
|
SRR28170812
|
Sensitive
|
M.canetti
|
None
|
SRR5818605
|
Other
|
M.canetti
|
None
|
SRR6982259
|
Sensitive
|
lineage4.8.1
|
None
|
SRR21277120
|
Sensitive
|
lineage4.5
|
None
|
SRR832994
|
MDR-TB
|
lineage4.8.1
|
None
|
ERR11464994
|
Sensitive
|
lineage4.8.1
|
None
|
ERR11465987
|
XDR-TB
|
lineage1.2.2.2;lineage4.8.1
|
None
|
ERR550803
|
Sensitive
|
lineage4.8.1
|
de
|
ERR11465379
|
Sensitive
|
lineage4.8.1
|
None
|
SRR1165641
|
MDR-TB
|
lineage4.8.1
|
None
|
ERR551953
|
MDR-TB
|
lineage4.8.1
|
sz
|
ERR2516070
|
MDR-TB
|
lineage4.8.1
|
za
|
SAMN02586082
|
MDR-TB
|
lineage4.8.1
|
za
|
SRR4033227
|
Sensitive
|
lineage4.8.1
|
za
|
ERR4830542
|
MDR-TB
|
lineage4.8.1
|
None
|
ERR11082146
|
Sensitive
|
lineage4.8.1
|
None
|
ERR7737677
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR1173033
|
MDR-TB
|
lineage4.8.1
|
None
|
ERR11252628
|
Sensitive
|
lineage4.8.1
|
None
|
ERR9992861
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR10177262
|
Sensitive
|
M.canetti
|
None
|
ERR11775047
|
Sensitive
|
lineage4.8.1
|
None
|
ERR11775804
|
Sensitive
|
lineage4.8.1
|
None
|
SRR1172260
|
MDR-TB
|
lineage4.8.1
|
None
|
ERR9907685
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR1173296
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR1173167
|
MDR-TB
|
lineage4.8.1
|
None
|
SAMN02403529
|
MDR-TB
|
lineage4.8.1
|
za
|
ERR8975344
|
Sensitive
|
lineage4.8.1
|
None
|
ERR13289886
|
Sensitive
|
lineage4.8.1
|
None
|
ERR13288896
|
HR-TB
|
lineage4.8.1
|
None
|
SRR29126211
|
Sensitive
|
lineage4.8.1
|
None
|
ERR4817181
|
Sensitive
|
M.canetti
|
None
|
ERR11465788
|
Sensitive
|
lineage4.8.1
|
None
|
ERR037550
|
Sensitive
|
lineage4.8.1
|
mw
|
SRR1165212
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR1167355
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR1172089
|
MDR-TB
|
lineage4.8.1
|
None
|
ERR11488461
|
MDR-TB
|
lineage4.8.1
|
None
|
ERR047008
|
Sensitive
|
lineage4.8.1
|
gb
|
ERR117650
|
MDR-TB
|
lineage4.8.1
|
None
|
ERR11466463
|
Sensitive
|
lineage4.8.1
|
None
|
ERR2513600
|
Sensitive
|
lineage4.8.1
|
gb
|
ERR2515992
|
Sensitive
|
lineage4.8.1
|
za
|
SRR10315471
|
Pre-XDR-TB
|
lineage4.8.1
|
None
|
SRR5818668
|
Sensitive
|
M.canetti
|
dj
|
SRR5818685
|
Sensitive
|
M.canetti
|
None
|
SRR9970999
|
Pre-XDR-TB
|
lineage4.8.1
|
None
|
SRR11342693
|
MDR-TB
|
lineage4.8.1
|
None
|
ERR4814447
|
Sensitive
|
lineage4.8.1
|
None
|
SRR1172749
|
Pre-XDR-TB
|
lineage4.8.1
|
None
|
ERR552304
|
Sensitive
|
M.canetti
|
None
|
SRR4033220
|
Sensitive
|
lineage4.8.1
|
za
|
ERR11465524
|
Sensitive
|
lineage4.8.1
|
None
|
SRR4033285
|
Sensitive
|
lineage4.8.1
|
za
|
ERR11488982
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR1165638
|
MDR-TB
|
lineage4.8.1
|
None
|
ERR4816573
|
Sensitive
|
lineage4.8.1
|
gb
|
ERR11465086
|
RR-TB
|
lineage4.8.1
|
None
|
SRR19304034
|
Other
|
lineage4.8.1
|
None
|
ERR9907707
|
RR-TB
|
lineage4.8.1
|
None
|
ERR4815361
|
Other
|
M.canetti
|
None
|
SRR6650709
|
Sensitive
|
M.canetti
|
None
|
SRR7069849
|
Sensitive
|
lineage4.8.1
|
None
|
ERR11465380
|
Sensitive
|
lineage4.8.1
|
None
|
SRR6896250
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR4033217
|
Sensitive
|
lineage4.8.1
|
za
|
ERR190376
|
Sensitive
|
lineage4.8.1
|
mw
|
SRR29093727
|
RR-TB
|
lineage4.8.1
|
None
|
ERR11465604
|
HR-TB
|
lineage4.8.1
|
None
|
SRR4033290
|
Sensitive
|
lineage4.8.1
|
None
|
SRR10177261
|
Sensitive
|
M.canetti
|
None
|
ERR8975878
|
Sensitive
|
lineage4.8.1
|
None
|
ERR11050958
|
Sensitive
|
lineage4.8.1
|
None
|
ERR4809159
|
Pre-XDR-TB
|
lineage4.8.1
|
za
|
ERR171146
|
Sensitive
|
lineage4.8.1
|
za
|
ERR11465105
|
Sensitive
|
lineage4.8.1
|
None
|
ERR551056
|
Sensitive
|
M.canetti
|
None
|
ERR2514668
|
Other
|
lineage4.8.1
|
gb
|
SRR4033246
|
Sensitive
|
lineage4.8.1
|
za
|
ERR11466547
|
Sensitive
|
lineage4.8.1
|
None
|
SRR22251496
|
Sensitive
|
lineage4.8.1
|
None
|
SRR1169323
|
MDR-TB
|
lineage4.8.1
|
None
|
SAMEA2533858
|
Sensitive
|
lineage4.8.1
|
None
|
SRR2101710
|
Sensitive
|
lineage4.8.1
|
None
|
SRR22048385
|
Other
|
lineage4.8.1
|
None
|
SRR10177259
|
Other
|
M.canetti
|
None
|
SAMN02403594
|
MDR-TB
|
lineage4.8.1
|
za
|
SRR1140930
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR4033224
|
Sensitive
|
lineage4.8.1
|
za
|
ERR3597002
|
Other
|
M.canetti
|
None
|
ERR047005
|
Sensitive
|
lineage4.8.1
|
gb
|
SRR6044857
|
Other
|
lineage4.8.1
|
gb
|
ERR8975817
|
Pre-XDR-TB
|
lineage4.8.1
|
None
|
SRR2101417
|
Sensitive
|
lineage4.3.2.1;lineage4.8.1
|
None
|
SRR1184371
|
MDR-TB
|
lineage4.8.1
|
None
|
ERR7911196
|
Pre-XDR-TB
|
lineage4.8.1
|
za
|
SAMN02403593
|
MDR-TB
|
lineage4.8.1
|
za
|
ERR11466153
|
Sensitive
|
lineage4.8.1
|
None
|
SRR21689574
|
Sensitive
|
lineage4.8.1
|
None
|
SRR6045325
|
Other
|
lineage4.8.1
|
gb
|
ERR11465916
|
Sensitive
|
lineage4.8.1
|
None
|
ERR8975028
|
MDR-TB
|
lineage4.8.1
|
None
|
ERR11466479
|
Sensitive
|
lineage4.8.1
|
None
|
SRR4033249
|
Sensitive
|
lineage4.8.1
|
za
|
ERR9907728
|
RR-TB
|
lineage4.8.1
|
None
|
SRR4033231
|
Sensitive
|
lineage4.8.1
|
za
|
ERR552415
|
MDR-TB
|
lineage4.8.1
|
sz
|
ERR551057
|
Other
|
M.canetti
|
None
|
SRR4033247
|
Sensitive
|
lineage4.8.1
|
za
|
ERR266106
|
Sensitive
|
M.canetti
|
None
|
SRR1169205
|
MDR-TB
|
lineage4.8.1
|
None
|
ERR313117
|
Other
|
M.canetti
|
None
|
ERR5918097
|
Sensitive
|
lineage4.8.1
|
za
|
SRR2100914
|
MDR-TB
|
lineage4.8.1
|
None
|
ERR9993125
|
MDR-TB
|
lineage4.8.1
|
None
|
ERR7911432
|
MDR-TB
|
lineage4.8.1
|
za
|
ERR9907676
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR19303797
|
Sensitive
|
lineage4.8.1
|
None
|
SRR3675590
|
Sensitive
|
lineage4.8.1
|
None
|
ERR11488981
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR5818652
|
Sensitive
|
M.canetti
|
dj
|
ERR11082463
|
Sensitive
|
lineage4.8.1
|
None
|
ERR11069025
|
Sensitive
|
lineage4.8.1
|
None
|
ERR11811405
|
Sensitive
|
lineage4.8.1
|
None
|
SRR2101390
|
Sensitive
|
lineage4.8.1
|
None
|
SRR16058674
|
Other
|
M.canetti
|
None
|
ERR8975085
|
Sensitive
|
lineage4.8.1
|
None
|
ERR11068420
|
Sensitive
|
lineage4.8.1
|
None
|
ERR9907765
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR1184340
|
Pre-XDR-TB
|
lineage4.8.1
|
None
|
SRR1165659
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR1196497
|
Pre-XDR-TB
|
lineage4.8.1
|
None
|
SRR1175058
|
MDR-TB
|
lineage4.8.1
|
None
|
ERR8975552
|
Sensitive
|
lineage4.8.1
|
None
|
ERR266109
|
Sensitive
|
M.canetti
|
None
|
ERR551324_ERR551323
|
Sensitive
|
lineage4.8.1
|
None
|
ERR11488469
|
XDR-TB
|
lineage4.8.1
|
None
|
ERR2515353
|
MDR-TB
|
lineage4.8.1
|
za
|
ERR11465100
|
Sensitive
|
lineage4.8.1
|
None
|
ERR8975414
|
HR-TB
|
lineage4.8.1
|
None
|
ERR11252616
|
Sensitive
|
lineage4.8.1
|
None
|
ERR7801240
|
Sensitive
|
lineage4.8.1
|
None
|
SRR6982200
|
Sensitive
|
lineage4.8.1
|
None
|
SRR10177263
|
Sensitive
|
M.canetti
|
None
|
SRR10177258
|
Other
|
M.canetti
|
None
|
SRR5818661
|
Other
|
M.canetti
|
dj
|
ERR552305
|
Sensitive
|
M.canetti
|
None
|
SRR1165654
|
MDR-TB
|
lineage4.8.1
|
None
|
ERR10748577
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR1172069
|
MDR-TB
|
lineage4.8.1
|
None
|
ERR10748228
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR2101555
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR5818676
|
Other
|
M.canetti
|
dj
|
SRR24061598
|
Sensitive
|
M.canetti
|
None
|
SRR2101522
|
Sensitive
|
lineage4.8.1
|
None
|
ERR11466356
|
Sensitive
|
lineage4.8.1
|
None
|
SRR1165335
|
MDR-TB
|
lineage4.8.1
|
None
|
ERR8975471
|
HR-TB
|
lineage4.8.1
|
None
|
ERR7737873
|
RR-TB
|
lineage4.8.1
|
None
|
SRR4033229
|
Sensitive
|
lineage4.8.1
|
za
|
SRR1181049
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR2101697
|
Sensitive
|
lineage4.3.3;lineage4.8.1
|
None
|
SRR10177260
|
Other
|
M.canetti
|
None
|
SRR4033278
|
Sensitive
|
lineage4.8.1
|
za
|
SRR833028
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR1180925
|
Sensitive
|
lineage4.8.1
|
None
|
ERR11465219
|
Sensitive
|
lineage4.8.1
|
None
|
ERR11465659
|
Sensitive
|
lineage4.8.1
|
None
|
ERR11466021
|
Sensitive
|
lineage4.8.1
|
None
|
ERR11466204
|
Sensitive
|
lineage4.8.1
|
None
|
ERR11488462
|
MDR-TB
|
lineage4.8.1
|
None
|
ERR2516043
|
MDR-TB
|
lineage4.8.1
|
za
|
SAMN02403592
|
MDR-TB
|
lineage4.8.1
|
za
|
ERR4819266
|
Sensitive
|
lineage4.8.1
|
gb
|
ERR10748179
|
Pre-XDR-TB
|
lineage4.8.1
|
None
|
ERR11465651
|
Sensitive
|
lineage4.8.1
|
None
|
ERR11775567
|
Sensitive
|
lineage4.8.1
|
None
|
SRR4033257
|
Sensitive
|
lineage4.8.1
|
None
|
SRR4033270
|
Sensitive
|
lineage4.8.1
|
None
|
SRR1184381
|
MDR-TB
|
|
None
|
ERR11775515
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR6855790
|
MDR-TB
|
lineage4.8.1
|
None
|
ERR8975379
|
Sensitive
|
lineage4.8.1
|
None
|
SRR10315637
|
MDR-TB
|
lineage4.8.1
|
None
|
ERR13288821
|
RR-TB
|
lineage4.8.1
|
None
|
ERR13288906
|
Sensitive
|
lineage4.8.1
|
None
|
SRR9971371
|
RR-TB
|
lineage4.8.1
|
None
|
ERR11067939
|
Sensitive
|
lineage4.8.1
|
None
|
SRR29906794
|
Sensitive
|
lineage4.8.1
|
None
|
SRR29055924
|
MDR-TB
|
lineage4.8.1
|
None
|
ERR11466377
|
Sensitive
|
lineage4.8.1
|
None
|
ERR8975167
|
HR-TB
|
lineage4.8.1
|
None
|
SRR6896456
|
Sensitive
|
lineage4.8.1
|
None
|
ERR11466450
|
Sensitive
|
lineage4.8.1
|
None
|
ERR3597003
|
Sensitive
|
M.canetti
|
None
|
SRR6982149
|
Sensitive
|
lineage4.8.1
|
None
|
ERR11465148
|
Sensitive
|
lineage4.8.1
|
None
|
ERR11465652
|
Sensitive
|
lineage4.8.1
|
None
|
ERR313114
|
Sensitive
|
M.canetti
|
None
|
ERR551323
|
Sensitive
|
lineage4.8.1
|
None
|
ERR11081007
|
Sensitive
|
lineage4.8.1
|
None
|
SRR11349139
|
MDR-TB
|
lineage4.8.1
|
None
|
ERR7911197
|
Pre-XDR-TB
|
lineage4.8.1
|
za
|
SAMN02403595
|
MDR-TB
|
lineage4.8.1
|
za
|
ERR11067875
|
Sensitive
|
lineage4.8.1
|
None
|
SRR4033226
|
Sensitive
|
lineage4.8.1
|
None
|
SRR4033240
|
Sensitive
|
lineage4.8.1
|
za
|
SRR4033279
|
Sensitive
|
lineage4.8.1
|
za
|
ERR11252646
|
Sensitive
|
lineage4.8.1
|
None
|
SRR24061599
|
Sensitive
|
M.canetti
|
None
|
SRR24061600
|
Sensitive
|
M.canetti
|
None
|
ERR171147
|
Sensitive
|
lineage4.8.1
|
za
|
ERR11488518
|
RR-TB
|
lineage4.8.1
|
None
|
SRR6896177
|
HR-TB
|
lineage4.8.1
|
None
|
ERR3597005
|
Sensitive
|
M.canetti
|
None
|
ERR1034937
|
Sensitive
|
lineage4.8.1
|
za
|
SRR4033282
|
Sensitive
|
lineage4.8.1
|
za
|
ERR11252564
|
Sensitive
|
lineage4.8.1
|
None
|
SRR5818567
|
Other
|
M.canetti
|
dj
|
SRR4033254
|
Sensitive
|
lineage4.8.1
|
za
|
ERR2515217
|
Sensitive
|
lineage4.8.1
|
za
|
ERR046776
|
Sensitive
|
lineage4.8.1
|
gb
|
ERR2515245
|
RR-TB
|
lineage4.8.1
|
za
|
SRR19303953
|
Sensitive
|
lineage4.8.1
|
None
|
ERR11488456
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR2101703
|
Sensitive
|
lineage4.8.1
|
None
|
SRR1167375
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR6896168
|
Sensitive
|
lineage4.8.1
|
None
|
ERR266107
|
Other
|
M.canetti
|
None
|
ERR552416
|
MDR-TB
|
lineage4.8.1
|
None
|
ERR551055
|
Sensitive
|
M.canetti
|
None
|
SRR9971344
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR1172096
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR6856061
|
Sensitive
|
lineage4.8.1
|
None
|
ERR4818127
|
Sensitive
|
lineage4.8.1
|
None
|
ERR8774454
|
RR-TB
|
lineage4.8.1
|
None
|
SAMN02585993
|
MDR-TB
|
lineage4.8.1
|
za
|
ERR1034988
|
RR-TB
|
lineage4.8.1
|
za
|
ERR552780
|
MDR-TB
|
lineage4.8.1
|
sz
|
ERR10465837
|
Sensitive
|
lineage4.8.1
|
None
|
ERR7737876
|
MDR-TB
|
lineage4.8.1
|
None
|
ERR11067720
|
HR-TB
|
lineage4.8.1
|
None
|
SRR4033280
|
Sensitive
|
lineage4.8.1
|
za
|
ERR047006
|
Sensitive
|
lineage4.8.1
|
gb
|
SRR1172782
|
MDR-TB
|
lineage4.8.1
|
None
|
ERR4817853
|
Other
|
lineage4.8.1
|
None
|
SRR1167381
|
MDR-TB
|
lineage4.8.1
|
None
|
ERR4822178
|
Sensitive
|
lineage4.8.1
|
gb
|
ERR278527
|
MDR-TB
|
lineage4.8.1
|
None
|
ERR266110
|
Other
|
M.canetti
|
None
|
ERR7737628
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR29055689
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR2101538
|
Sensitive
|
lineage4.8.1
|
None
|
ERR313113
|
Other
|
M.canetti
|
None
|
SRR9971150
|
RR-TB
|
lineage4.8.1
|
None
|
SRR9971224
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR4033236
|
Sensitive
|
lineage4.8.1
|
za
|
SRR1167278
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR11349197
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR4033259
|
Sensitive
|
lineage4.8.1
|
za
|
SRR4033273
|
Sensitive
|
lineage4.8.1
|
None
|
ERR552307
|
Sensitive
|
M.canetti
|
None
|
SRR21727716
|
HR-TB
|
lineage4.8.1
|
None
|
ERR386886
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR1165626
|
MDR-TB
|
lineage4.8.1
|
None
|
ERR4423750
|
RR-TB
|
lineage4.8.1
|
None
|
SRR4033234
|
Sensitive
|
lineage4.8.1
|
None
|
SRR1180329
|
Sensitive
|
lineage4.8.1
|
None
|
SRR1173081
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR1169125
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR1169226
|
MDR-TB
|
lineage4.8.1
|
None
|
ERR11488646
|
HR-TB
|
lineage4.8.1
|
None
|
ERR4815155
|
Sensitive
|
lineage4.8.1
|
gb
|
ERR4195502
|
Sensitive
|
lineage4.8.1
|
None
|
ERR4830492
|
MDR-TB
|
lineage4.8.1
|
za
|
ERR11488663
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR9971084
|
MDR-TB
|
lineage4.8.1
|
None
|
ERR7737657
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR4033292
|
Sensitive
|
lineage4.8.1
|
za
|
ERR9907755
|
Pre-XDR-TB
|
lineage4.8.1
|
None
|
ERR11466414
|
Sensitive
|
lineage4.8.1
|
None
|
SRR1169003
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR1167343
|
MDR-TB
|
lineage4.8.1
|
None
|
ERR8975195
|
Sensitive
|
lineage4.8.1
|
None
|
ERR8975758
|
Pre-XDR-TB
|
lineage4.8.1
|
None
|
SRR26331641
|
MDR-TB
|
lineage4.8.1
|
None
|
ERR8975841
|
Sensitive
|
lineage4.8.1
|
None
|
SRR10315590
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR29055696
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR11342675
|
Pre-XDR-TB
|
lineage4.8.1
|
None
|
ERR266120
|
Sensitive
|
M.canetti
|
None
|
ERR11466135
|
Sensitive
|
lineage4.8.1
|
None
|
ERR11488531
|
Pre-XDR-TB
|
lineage4.8.1
|
None
|
SRR4033230
|
Sensitive
|
lineage4.8.1
|
za
|
ERR3597007
|
Sensitive
|
M.canetti
|
None
|
SAMN02053763
|
MDR-TB
|
lineage4.8.1
|
za
|
SRR29056342
|
Sensitive
|
lineage4.8.1
|
None
|
ERR11488892
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR9971341
|
Pre-XDR-TB
|
lineage4.8.1
|
None
|
ERR2199997
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR6982352
|
Sensitive
|
lineage4.8.1
|
None
|
ERR552463
|
MDR-TB
|
lineage4.8.1
|
sz
|
SRR24799187
|
Sensitive
|
lineage4.8.1
|
None
|
ERR9125475
|
Other
|
M.canetti
|
None
|
ERR4816019
|
Sensitive
|
M.canetti
|
None
|
SRR7068868
|
Sensitive
|
lineage4.8.1
|
None
|
ERR4815654
|
HR-TB
|
lineage4.8.1
|
gb
|
ERR5918155
|
Sensitive
|
lineage4.8.1
|
za
|
SRR1169161
|
MDR-TB
|
lineage4.8.1
|
None
|
ERR11252515
|
Sensitive
|
lineage4.8.1
|
None
|
ERR13286102
|
MDR-TB
|
lineage4.8.1
|
None
|
ERR495157
|
Sensitive
|
lineage4.8.1
|
None
|
ERR2515123
|
MDR-TB
|
lineage4.8.1
|
za
|
ERR11488364
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR6982370
|
Other
|
lineage4.8.1
|
None
|
SAMN02586019
|
Pre-XDR-TB
|
lineage4.8.1
|
za
|
SRR9971014
|
MDR-TB
|
lineage4.8.1
|
None
|
ERR11067186
|
Sensitive
|
lineage4.8.1
|
None
|
ERR7821138
|
Sensitive
|
lineage4.8.1
|
None
|
SRR12708389
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR4033268
|
Sensitive
|
lineage4.8.1
|
za
|
ERR2515928
|
Sensitive
|
lineage4.8.1
|
za
|
SRR1169169
|
MDR-TB
|
lineage4.8.1
|
None
|
ERR2200007
|
Sensitive
|
lineage4.8.1
|
sz
|
SRR1165677
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR1180364
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR21677947
|
HR-TB
|
lineage4.8.1
|
None
|
ERR11465924
|
Sensitive
|
lineage4.8.1
|
None
|
SRR6982360
|
Sensitive
|
lineage4.8.1
|
None
|
ERR117662
|
RR-TB
|
lineage4.8.1
|
None
|
ERR11466136
|
Sensitive
|
lineage4.8.1
|
None
|
SRR9971125
|
MDR-TB
|
lineage4.8.1
|
None
|
ERR11466320
|
Sensitive
|
lineage4.8.1
|
None
|
SRR1165688
|
MDR-TB
|
lineage4.8.1
|
None
|
ERR552320
|
Sensitive
|
lineage4.8.1
|
de
|
ERR11068640
|
Sensitive
|
lineage4.8.1
|
None
|
SRR1172311
|
MDR-TB
|
lineage4.8.1
|
None
|
ERR8975108
|
Sensitive
|
lineage4.8.1
|
None
|
ERR8975547
|
Sensitive
|
lineage4.8.1
|
None
|
SRR4033289
|
Sensitive
|
lineage4.8.1
|
za
|
SRR6982547
|
Sensitive
|
lineage4.3.3;lineage4.8.1
|
None
|
ERR2515601
|
Sensitive
|
lineage4.8.1
|
za
|
ERR7911200
|
MDR-TB
|
lineage4.8.1
|
za
|
ERR7911195
|
MDR-TB
|
lineage4.8.1
|
za
|
ERR4809335
|
RR-TB
|
lineage4.8.1
|
za
|
ERR5918031
|
Sensitive
|
lineage4.8.1
|
za
|
SRR1173424
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR22179528
|
Sensitive
|
M.canetti
|
None
|
SRR3082111
|
Sensitive
|
lineage4.8.1
|
None
|
ERR2199990
|
Sensitive
|
lineage4.8.1
|
sz
|
SRR4033267
|
Sensitive
|
lineage4.8.1
|
None
|
SRR4033277
|
Sensitive
|
lineage4.8.1
|
za
|
SRR4033243
|
Sensitive
|
lineage4.8.1
|
None
|
SRR6982477
|
Sensitive
|
lineage4.8.1
|
None
|
SRR1184041
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR1165670
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR6856109
|
Sensitive
|
lineage4.8.1
|
None
|
SRR6982086
|
Sensitive
|
lineage4.8.1
|
None
|
SRR2100217
|
MDR-TB
|
lineage4.8.1
|
None
|
ERR11465658
|
Sensitive
|
lineage4.8.1
|
None
|
ERR4821129
|
Sensitive
|
lineage4.8.1
|
gb
|
ERR12544160
|
Sensitive
|
lineage4.8.1
|
None
|
ERR11488753
|
MDR-TB
|
lineage4.8.1
|
None
|
ERR266122
|
Sensitive
|
La3;M.canetti
|
None
|
SAMN02053754
|
MDR-TB
|
lineage4.8.1
|
za
|
SRR1169185
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR1172067
|
RR-TB
|
lineage4.8.1
|
None
|
ERR4818729
|
Sensitive
|
lineage4.8.1
|
None
|
ERR4830500
|
Pre-XDR-TB
|
lineage4.8.1
|
za
|
ERR1023368
|
Sensitive
|
lineage4.8.1
|
None
|
ERR4795891
|
Sensitive
|
lineage4.8.1
|
None
|
ERR11067878
|
Sensitive
|
lineage4.8.1
|
None
|
ERR11081346
|
Sensitive
|
lineage4.8.1
|
None
|
ERR11466040
|
Sensitive
|
lineage4.8.1
|
None
|
ERR11775785
|
Sensitive
|
lineage4.8.1
|
None
|
SAMN02403582
|
MDR-TB
|
lineage4.8.1
|
za
|
ERR11050643
|
Sensitive
|
lineage4.8.1
|
None
|
ERR4819927
|
Sensitive
|
M.canetti
|
None
|
ERR11488530
|
Pre-XDR-TB
|
lineage4.8.1
|
None
|
SRR2101416
|
Sensitive
|
lineage4.8.1
|
None
|
ERR11466104
|
Sensitive
|
lineage4.8.1
|
None
|
ERR279626
|
Sensitive
|
lineage4.8.1
|
None
|
ERR11466342
|
Sensitive
|
lineage4.8.1
|
None
|
ERR8774381
|
Sensitive
|
lineage4.8.1
|
None
|
SRR4033241
|
Sensitive
|
lineage4.8.1
|
za
|
ERR11466145
|
Sensitive
|
lineage4.8.1
|
None
|
ERR551289
|
MDR-TB
|
lineage4.8.1
|
sz
|
ERR8686161
|
Sensitive
|
lineage4.8.1
|
None
|
ERR11465321
|
Sensitive
|
lineage4.8.1
|
None
|
ERR11775619
|
MDR-TB
|
lineage4.8.1
|
None
|
ERR2515192
|
Sensitive
|
lineage3.1.1;lineage4.8.1
|
za
|
SAMN02403584
|
MDR-TB
|
lineage4.8.1
|
za
|
SRR6981935
|
Sensitive
|
lineage4.8.1
|
None
|
SRR6982253
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR29093979
|
Sensitive
|
lineage4.8.1
|
None
|
ERR11466347
|
Sensitive
|
lineage4.8.1
|
None
|
ERR8975962
|
Sensitive
|
lineage4.8.1
|
None
|
SRR10315473
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR1167337
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR4033216
|
Sensitive
|
lineage4.8.1
|
za
|
SRR1181003
|
MDR-TB
|
lineage4.8.1
|
None
|
ERR4816586
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR1196768
|
MDR-TB
|
|
None
|
SRR29055664
|
MDR-TB
|
lineage4.8.1
|
None
|
ERR8975377
|
Sensitive
|
lineage4.8.1
|
None
|
ERR9029359
|
Sensitive
|
lineage4.8.1
|
None
|
ERR11465955
|
Sensitive
|
lineage4.8.1
|
None
|
ERR11489001
|
MDR-TB
|
lineage4.8.1
|
None
|
ERR1633929
|
Sensitive
|
lineage4.8.1
|
za
|
ERR13260825
|
Sensitive
|
lineage4.8.1
|
None
|
ERR9806652
|
Sensitive
|
lineage4.8.1
|
None
|
ERR4423749
|
RR-TB
|
lineage4.8.1
|
None
|
SRR4033275
|
Sensitive
|
lineage4.8.1
|
za
|
ERR11488569
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR6982131
|
Sensitive
|
lineage4.8.1
|
None
|
SRR2101777
|
Other
|
lineage4.8.1
|
None
|
ERR2199975
|
Sensitive
|
lineage4.8.1
|
sz
|
ERR8699207
|
Sensitive
|
lineage4.8.1
|
None
|
ERR13260784
|
Sensitive
|
lineage4.8.1
|
None
|
SRR11342668
|
Pre-XDR-TB
|
lineage4.8.1
|
None
|
SAMN02403536
|
MDR-TB
|
lineage4.8.1
|
za
|
SRR4033274
|
Sensitive
|
lineage4.8.1
|
za
|
ERR266121
|
Sensitive
|
M.canetti
|
None
|
SRR8758876
|
Sensitive
|
lineage4.8.1
|
None
|
SRR21732891
|
Sensitive
|
lineage4.8.1
|
None
|
SRR4033238
|
Sensitive
|
lineage4.8.1
|
za
|
SRR4033239
|
Sensitive
|
lineage4.8.1
|
None
|
SAMN02403554
|
MDR-TB
|
lineage4.8.1
|
sz
|
ERR11773710
|
MDR-TB
|
lineage4.8.1
|
None
|
ERR11465778
|
Sensitive
|
lineage4.8.1
|
None
|
SRR4033228
|
Sensitive
|
lineage4.8.1
|
za
|
ERR13286183
|
MDR-TB
|
lineage4.8.1
|
None
|
ERR11488396
|
MDR-TB
|
lineage4.8.1
|
None
|
ERR9992655
|
XDR-TB
|
lineage4.8.1
|
None
|
SAMN02350463
|
MDR-TB
|
lineage4.8.1
|
za
|
SAMN02403597
|
MDR-TB
|
lineage4.8.1
|
za
|
ERR4815813
|
Sensitive
|
lineage4.8.1
|
None
|
SRR11342662
|
MDR-TB
|
lineage4.8.1
|
None
|
ERR313116
|
Sensitive
|
M.canetti
|
None
|
SRR6832841
|
Sensitive
|
lineage4.8
|
None
|
ERR11488363
|
MDR-TB
|
lineage4.8.1
|
None
|
ERR11049128
|
Sensitive
|
lineage4.8.1
|
None
|
ERR11465861
|
Sensitive
|
lineage4.8.1
|
None
|
ERR11466316
|
Sensitive
|
lineage4.8.1
|
None
|
ERR2515612
|
MDR-TB
|
lineage4.8.1
|
za
|
SAMN02586049
|
MDR-TB
|
lineage4.8.1
|
za
|
ERR047016
|
Sensitive
|
lineage4.8.1
|
gb
|
ERR4818031
|
Sensitive
|
lineage4.8.1
|
gb
|
SRR6982117
|
RR-TB
|
lineage4.8.1
|
None
|
ERR8975453
|
HR-TB
|
lineage4.8.1
|
None
|
ERR11465166
|
Sensitive
|
lineage4.8.1
|
None
|
ERR3597001
|
Sensitive
|
M.canetti
|
None
|
SRR4033253
|
Sensitive
|
lineage4.8.1
|
za
|
SRR4033286
|
Sensitive
|
lineage4.8.1
|
None
|
SRR1184124
|
Sensitive
|
lineage4.8.1
|
None
|
SRR4033261
|
Sensitive
|
lineage4.8.1
|
za
|
SRR4033264
|
Sensitive
|
lineage4.8.1
|
za
|
SRR4033266
|
Sensitive
|
lineage4.8.1
|
za
|
ERR4821046
|
Sensitive
|
M.canetti
|
None
|
SRR4033281
|
Sensitive
|
lineage4.8.1
|
za
|