Run ID: SRR4033226
Sample name:
Date: 04-04-2023 05:55:41
Number of reads: 1089011
Percentage reads mapped: 99.78
Strain: lineage4.8.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 1.0 |
lineage4.8.1 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
rpoB | 762128 | c.2322G>A | synonymous_variant | 0.14 |
rpoB | 762173 | p.Glu789Asp | missense_variant | 0.1 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpR5 | 779125 | p.Cys46Arg | missense_variant | 0.12 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1303016 | p.Val29Gly | missense_variant | 0.15 |
Rv1258c | 1407023 | c.318G>A | synonymous_variant | 0.11 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1473349 | n.1505delT | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2155836 | c.276C>A | synonymous_variant | 0.12 |
PPE35 | 2168149 | p.Pro822Ser | missense_variant | 1.0 |
PPE35 | 2169320 | p.Leu431Phe | missense_variant | 0.29 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
folC | 2746411 | c.1187delC | frameshift_variant | 0.15 |
folC | 2746607 | p.Ala331Val | missense_variant | 0.13 |
ribD | 2987307 | p.Ala157Pro | missense_variant | 0.22 |
ald | 3087144 | c.326delA | frameshift_variant | 0.11 |
fbiD | 3339040 | c.-78T>C | upstream_gene_variant | 1.0 |
fbiB | 3642414 | p.Pro294Ser | missense_variant | 0.11 |
fbiB | 3642421 | p.Arg296Gln | missense_variant | 0.11 |
fbiB | 3642874 | p.Leu447Arg | missense_variant | 1.0 |
alr | 3840954 | p.Val156Ala | missense_variant | 0.12 |
rpoA | 3878239 | p.Asp90Val | missense_variant | 0.12 |
clpC1 | 4038857 | c.1848C>A | synonymous_variant | 0.27 |
clpC1 | 4039091 | c.1614G>A | synonymous_variant | 0.1 |
embC | 4239842 | c.-21C>A | upstream_gene_variant | 0.14 |
embA | 4242475 | c.-758G>A | upstream_gene_variant | 0.13 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
Rv3083 | 3448497 | c.-6_*1408del | transcript_ablation | 1.0 |