Run ID: SRR2101739
Sample name:
Date: 03-04-2023 23:53:17
Number of reads: 401687
Percentage reads mapped: 99.55
Strain: lineage4.4.1.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.4 | Euro-American | S;T | None | 1.0 |
lineage4.4.1.1 | Euro-American | S;Orphans | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 490765 | c.-18T>C | upstream_gene_variant | 0.12 |
ccsA | 619980 | c.90G>A | synonymous_variant | 0.2 |
ccsA | 620801 | p.Val304Ala | missense_variant | 0.12 |
rpoB | 761017 | p.Glu404Gly | missense_variant | 0.2 |
rpoB | 761683 | p.Leu626Pro | missense_variant | 0.14 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776723 | p.Tyr586* | stop_gained | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1302875 | c.-56C>A | upstream_gene_variant | 0.14 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rpsA | 1833616 | c.75A>G | synonymous_variant | 0.1 |
rpsA | 1834518 | p.Leu326Pro | missense_variant | 0.11 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2102990 | p.Val18Ala | missense_variant | 1.0 |
katG | 2154430 | p.His561Arg | missense_variant | 0.14 |
katG | 2154904 | p.Glu403Ala | missense_variant | 0.15 |
PPE35 | 2169840 | p.Gly258Asp | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
ribD | 2987053 | p.Asn72Ile | missense_variant | 0.18 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
Rv3083 | 3448390 | c.-114A>C | upstream_gene_variant | 0.12 |
Rv3083 | 3448608 | c.105G>A | synonymous_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
Rv3236c | 3612416 | p.Glu234Val | missense_variant | 0.25 |
Rv3236c | 3612665 | p.Val151Ala | missense_variant | 1.0 |
fbiB | 3640782 | c.-753C>G | upstream_gene_variant | 0.25 |
fbiB | 3641812 | p.Leu93Trp | missense_variant | 0.33 |
embC | 4240692 | p.Val277Ala | missense_variant | 0.11 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4244786 | c.1556delT | frameshift_variant | 0.33 |
ubiA | 4269714 | p.Leu40Phe | missense_variant | 0.14 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |