Run ID: SRR22048373
Sample name:
Date: 04-04-2023 03:44:43
Number of reads: 1209601
Percentage reads mapped: 94.05
Strain: lineage4.1.2.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 0.98 |
lineage4.1.2 | Euro-American | T;H | None | 0.98 |
lineage4.1.2.1 | Euro-American (Haarlem) | T1;H1 | RD182 | 0.99 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491591 | p.Lys270Met | missense_variant | 1.0 |
mshA | 575679 | p.Asn111Ser | missense_variant | 0.96 |
mshA | 576582 | p.Pro412Leu | missense_variant | 0.15 |
rpoB | 760115 | c.309C>T | synonymous_variant | 1.0 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 0.97 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776760 | p.Phe574Ser | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
atpE | 1461097 | p.Ala18Gly | missense_variant | 0.22 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472683 | n.838T>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472687 | n.842A>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472689 | n.844C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474760 | n.1103A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474794 | n.1137C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474824 | n.1167A>G | non_coding_transcript_exon_variant | 0.75 |
rrl | 1474830 | n.1173A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474831 | n.1174A>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474832 | n.1175A>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474864 | n.1207C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475783 | n.2126T>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475803 | n.2146T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475804 | n.2147G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475816 | n.2159C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475817 | n.2160A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476515 | n.2858C>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476524 | n.2867C>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476525 | n.2868A>G | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476530 | n.2873C>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476536 | n.2879G>A | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476539 | n.2882A>G | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476540 | n.2883C>G | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476547 | n.2890C>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476583 | n.2926G>A | non_coding_transcript_exon_variant | 0.67 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518076 | c.-39C>T | upstream_gene_variant | 1.0 |
ald | 3086739 | c.-81G>A | upstream_gene_variant | 0.12 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 0.96 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
aftB | 4267656 | p.Gly394Ala | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4408400 | c.-198G>T | upstream_gene_variant | 0.12 |