Run ID: SRR23071982
Sample name:
Date: 04-04-2023 04:21:03
Number of reads: 6187428
Percentage reads mapped: 99.97
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
mshA | 576100 | p.Asp251Glu | missense_variant | 0.14 |
rpoC | 764574 | p.Leu402Arg | missense_variant | 0.13 |
mmpR5 | 779181 | c.198delG | frameshift_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
pepQ | 2860144 | p.Val92Gly | missense_variant | 0.13 |
whiB7 | 3568437 | c.243T>G | synonymous_variant | 0.14 |
embC | 4240465 | p.Phe201Leu | missense_variant | 0.12 |
embB | 4248309 | p.Phe599Cys | missense_variant | 0.15 |
embB | 4248319 | c.1806A>C | synonymous_variant | 0.15 |
panD | 4043882 | c.-897_399del | start_lost&conservative_inframe_deletion | 1.0 |