Run ID: SRR3732567
Sample name:
Date: 04-04-2023 05:35:40
Number of reads: 2354950
Percentage reads mapped: 99.55
Strain: lineage4.1.2.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 1.0 |
lineage4.1.2 | Euro-American | T;H | None | 0.98 |
lineage4.1.2.1 | Euro-American (Haarlem) | T1;H1 | RD182 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491591 | p.Lys270Met | missense_variant | 1.0 |
fgd1 | 491661 | c.879C>A | synonymous_variant | 0.13 |
mshA | 575679 | p.Asn111Ser | missense_variant | 1.0 |
rpoB | 760115 | c.309C>T | synonymous_variant | 1.0 |
rpoC | 763251 | c.-119C>T | upstream_gene_variant | 0.13 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpR5 | 779378 | p.Pro130Leu | missense_variant | 0.14 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472070 | n.225G>A | non_coding_transcript_exon_variant | 0.22 |
rrl | 1474544 | n.887G>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1475602 | n.1945G>A | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476047 | n.2390G>A | non_coding_transcript_exon_variant | 0.17 |
inhA | 1674434 | p.Val78Ala | missense_variant | 0.14 |
rpsA | 1834917 | p.Thr459Asn | missense_variant | 0.13 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2102353 | p.Gln230His | missense_variant | 0.12 |
ndh | 2102917 | c.126G>T | synonymous_variant | 0.12 |
ndh | 2102937 | p.Ala36Thr | missense_variant | 0.12 |
katG | 2155303 | p.His270Leu | missense_variant | 0.15 |
PPE35 | 2167664 | p.Gln983His | missense_variant | 0.12 |
PPE35 | 2169608 | c.1005C>A | synonymous_variant | 0.15 |
PPE35 | 2169650 | c.963A>G | synonymous_variant | 0.12 |
PPE35 | 2170003 | p.Ala204Thr | missense_variant | 0.12 |
PPE35 | 2170367 | p.Gln82His | missense_variant | 0.12 |
PPE35 | 2170518 | p.Asp32Thr | missense_variant | 0.12 |
PPE35 | 2170547 | c.66A>T | synonymous_variant | 0.13 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289496 | c.-255G>A | upstream_gene_variant | 0.14 |
pncA | 2290225 | c.-984C>A | upstream_gene_variant | 0.18 |
kasA | 2518076 | c.-39C>T | upstream_gene_variant | 1.0 |
folC | 2747784 | c.-186C>T | upstream_gene_variant | 0.2 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
Rv3236c | 3612846 | p.Pro91Ser | missense_variant | 1.0 |
Rv3236c | 3613114 | c.3G>T | synonymous_variant | 0.14 |
fbiB | 3640617 | c.-918G>T | upstream_gene_variant | 0.17 |
embC | 4242201 | p.Gly780Val | missense_variant | 0.15 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
ethA | 4326921 | p.Ala185Thr | missense_variant | 0.14 |
ethA | 4327388 | p.Thr29Ile | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |