Run ID: SRR5485411
Sample name:
Date: 18-08-2022 08:27:44
Number of reads: 164161
Percentage reads mapped: 94.34
Strain:
Drug-resistance: MDR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rpoB | 761100 | p.Gln432Glu | missense_variant | 1.0 | rifampicin |
rpsL | 781822 | p.Lys88Met | missense_variant | 1.0 | streptomycin |
katG | 2155168 | p.Ser315Thr | missense_variant | 1.0 | isoniazid |
pncA | 2289207 | p.Asp12Gly | missense_variant | 0.14 | pyrazinamide |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
rrs | 1472493 | n.648T>G | non_coding_transcript_exon_variant | 0.28 |
embB | 4247594 | p.Cys361Gly | missense_variant | 0.18 |