TB-Profiler result

Run: SRR5485551
Summary

Run ID: SRR5485551

Sample name:

Date: 18-08-2022 08:27:01

Number of reads: 134569

Percentage reads mapped: 99.22

Strain:

Drug-resistance: MDR-TB

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rpoB 761140 p.His445Leu missense_variant 1.0 rifampicin
katG 2155168 p.Ser315Thr missense_variant 1.0 isoniazid
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
rrs 1472302 n.457G>C non_coding_transcript_exon_variant 0.21
rrs 1472493 n.648T>G non_coding_transcript_exon_variant 0.29
rrs 1473268 n.1423C>T non_coding_transcript_exon_variant 0.33
pncA 2289051 p.Tyr64Ser missense_variant 0.14