TB-Profiler result

Run: SRR5485596
Summary

Run ID: SRR5485596

Sample name:

Date: 18-08-2022 08:23:27

Number of reads: 106689

Percentage reads mapped: 99.17

Strain:

Drug-resistance: RR-TB

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rpoB 761139 p.His445Asn missense_variant 1.0 rifampicin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 6630 p.Gly464Asp missense_variant 0.13
rrs 1472302 n.457G>C non_coding_transcript_exon_variant 0.15
rrs 1472493 n.648T>G non_coding_transcript_exon_variant 0.25
rrs 1473234 n.1389A>G non_coding_transcript_exon_variant 0.24
katG 2155174 p.Ile313Ser missense_variant 0.27
eis 2715274 p.Ala20Val missense_variant 0.13