TB-Profiler result

Run: SRR5485606

Summary

Run ID: SRR5485606

Sample name:

Date: 18-08-2022 08:22:39

Number of reads: 93045

Percentage reads mapped: 99.2

Strain:

Drug-resistance: RR-TB


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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rpoB 761155 p.Ser450Leu missense_variant 1.0 rifampicin
pncA 2288826 p.Val139Ala missense_variant 1.0 pyrazinamide
pncA 2289114 p.His43Pro missense_variant 0.18 pyrazinamide
embB 4247431 p.Met306Ile missense_variant 0.91 ethambutol
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
rrs 1472302 n.457G>C non_coding_transcript_exon_variant 0.18
rrs 1472493 n.648T>G non_coding_transcript_exon_variant 0.21
rrs 1473202 n.1357C>A non_coding_transcript_exon_variant 0.2
pncA 2288924 p.Phe106Leu missense_variant 0.2
pncA 2289051 p.Tyr64Ser missense_variant 0.16
pncA 2289100 p.Lys48Gln missense_variant 0.18
pncA 2289151 p.Ile31Leu missense_variant 0.23
pncA 2289153 p.Ala30Gly missense_variant 0.14
eis 2715365 c.-33A>C upstream_gene_variant 0.18
embB 4247352 p.Asp280Ala missense_variant 0.18