Run ID: SRR5485606
Sample name:
Date: 18-08-2022 08:22:39
Number of reads: 93045
Percentage reads mapped: 99.2
Strain:
Drug-resistance: RR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rpoB | 761155 | p.Ser450Leu | missense_variant | 1.0 | rifampicin |
pncA | 2288826 | p.Val139Ala | missense_variant | 1.0 | pyrazinamide |
pncA | 2289114 | p.His43Pro | missense_variant | 0.18 | pyrazinamide |
embB | 4247431 | p.Met306Ile | missense_variant | 0.91 | ethambutol |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
rrs | 1472302 | n.457G>C | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472493 | n.648T>G | non_coding_transcript_exon_variant | 0.21 |
rrs | 1473202 | n.1357C>A | non_coding_transcript_exon_variant | 0.2 |
pncA | 2288924 | p.Phe106Leu | missense_variant | 0.2 |
pncA | 2289051 | p.Tyr64Ser | missense_variant | 0.16 |
pncA | 2289100 | p.Lys48Gln | missense_variant | 0.18 |
pncA | 2289151 | p.Ile31Leu | missense_variant | 0.23 |
pncA | 2289153 | p.Ala30Gly | missense_variant | 0.14 |
eis | 2715365 | c.-33A>C | upstream_gene_variant | 0.18 |
embB | 4247352 | p.Asp280Ala | missense_variant | 0.18 |