Run ID: SRR6046016
Sample name:
Date: 04-04-2023 12:09:33
Number of reads: 1860316
Percentage reads mapped: 95.76
Strain: lineage4.3.1.1
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.3 | Euro-American (LAM) | mainly-LAM | None | 1.0 |
lineage4.3.1 | Euro-American (LAM) | LAM9 | None | 1.0 |
lineage4.3.1.1 | Euro-American (LAM) | LAM9 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
rpoC | 764995 | c.1626C>G | synonymous_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1471660 | n.-186G>A | upstream_gene_variant | 1.0 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472599 | n.754G>T | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472658 | n.813G>A | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 0.35 |
rrs | 1472665 | n.820G>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472670 | n.825G>T | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472673 | n.828T>G | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472675 | n.830T>C | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472677 | n.832C>T | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472681 | n.837_838delTT | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472687 | n.842_843insC | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472690 | n.845C>A | non_coding_transcript_exon_variant | 0.3 |
rrs | 1472695 | n.850C>T | non_coding_transcript_exon_variant | 0.1 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.24 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.24 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.18 |
rrs | 1473001 | n.1156G>T | non_coding_transcript_exon_variant | 0.17 |
rrs | 1473088 | n.1243A>G | non_coding_transcript_exon_variant | 0.13 |
rrs | 1473100 | n.1255G>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1473104 | n.1259C>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1473110 | n.1265T>G | non_coding_transcript_exon_variant | 0.13 |
rrs | 1473111 | n.1266A>G | non_coding_transcript_exon_variant | 0.13 |
rrs | 1473121 | n.1276T>C | non_coding_transcript_exon_variant | 0.11 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1473252 | n.1407T>C | non_coding_transcript_exon_variant | 0.11 |
rrs | 1473259 | n.1414C>T | non_coding_transcript_exon_variant | 0.11 |
rrs | 1473270 | n.1425G>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1473276 | n.1431A>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474552 | n.895C>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1474558 | n.901G>A | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474584 | n.927C>T | non_coding_transcript_exon_variant | 0.43 |
rrl | 1474627 | n.970G>A | non_coding_transcript_exon_variant | 0.25 |
rrl | 1474632 | n.975G>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1474636 | n.979A>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1474637 | n.980C>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1474638 | n.981C>G | non_coding_transcript_exon_variant | 0.25 |
rrl | 1474639 | n.982G>C | non_coding_transcript_exon_variant | 0.25 |
rrl | 1474694 | n.1037C>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1475869 | n.2212C>A | non_coding_transcript_exon_variant | 0.23 |
rrl | 1475881 | n.2224T>C | non_coding_transcript_exon_variant | 0.27 |
rrl | 1475883 | n.2226A>T | non_coding_transcript_exon_variant | 0.21 |
rrl | 1475898 | n.2241A>G | non_coding_transcript_exon_variant | 0.25 |
rrl | 1475899 | n.2242G>A | non_coding_transcript_exon_variant | 0.25 |
rrl | 1475916 | n.2259C>G | non_coding_transcript_exon_variant | 0.27 |
rrl | 1475937 | n.2280A>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1475943 | n.2286G>A | non_coding_transcript_exon_variant | 0.24 |
rrl | 1475952 | n.2295A>G | non_coding_transcript_exon_variant | 0.24 |
rrl | 1475963 | n.2306G>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476225 | n.2568T>G | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476227 | n.2570C>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476229 | n.2572C>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476250 | n.2593C>G | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476251 | n.2594T>C | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476257 | n.2600G>C | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476293 | n.2636C>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476294 | n.2637A>G | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476295 | n.2638C>G | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476296 | n.2639C>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476297 | n.2640C>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476301 | n.2644A>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476302 | n.2645G>A | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476311 | n.2654G>C | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476312 | n.2655T>C | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476313 | n.2656G>A | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476332 | n.2675G>C | non_coding_transcript_exon_variant | 0.36 |
rrl | 1476338 | n.2681C>T | non_coding_transcript_exon_variant | 0.41 |
rrl | 1476353 | n.2696G>T | non_coding_transcript_exon_variant | 0.48 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.48 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.46 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.48 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.45 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.45 |
rrl | 1476425 | n.2768G>T | non_coding_transcript_exon_variant | 0.28 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.42 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.48 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.11 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2170048 | p.Leu189Val | missense_variant | 0.14 |
PPE35 | 2170053 | p.Thr187Ser | missense_variant | 0.1 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
thyX | 3067966 | c.-21G>A | upstream_gene_variant | 1.0 |
thyA | 3073868 | p.Thr202Ala | missense_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
clpC1 | 4038287 | c.2418C>T | synonymous_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4408156 | p.Leu16Arg | missense_variant | 1.0 |