Run ID: SRR6480601
Sample name:
Date: 04-04-2023 14:46:15
Number of reads: 4036417
Percentage reads mapped: 99.8
Strain: lineage4.5;lineage4.4.1.2
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.5 | Euro-American | H;T | RD122 | 0.13 |
lineage4.4 | Euro-American | S;T | None | 0.83 |
lineage4.4.1 | Euro-American (S-type) | S;T | None | 0.83 |
lineage4.4.1.2 | Euro-American | T1 | None | 0.85 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 7892 | c.591G>A | synonymous_variant | 0.16 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
gyrA | 9359 | c.2058C>A | synonymous_variant | 0.18 |
ccsA | 620029 | c.139C>T | synonymous_variant | 0.12 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2102990 | p.Val18Ala | missense_variant | 0.77 |
PPE35 | 2167770 | p.Ser948Ile | missense_variant | 0.74 |
PPE35 | 2169053 | c.1560T>C | synonymous_variant | 0.11 |
PPE35 | 2169840 | p.Gly258Asp | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2290211 | c.-970G>T | upstream_gene_variant | 0.78 |
pepQ | 2860213 | p.Pro69Leu | missense_variant | 0.9 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 0.83 |
Rv3083 | 3448608 | c.105G>A | synonymous_variant | 0.83 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
Rv3236c | 3613184 | c.-68C>T | upstream_gene_variant | 0.79 |
rpoA | 3878575 | c.-68C>T | upstream_gene_variant | 0.33 |
clpC1 | 4038318 | p.Pro796Leu | missense_variant | 0.16 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4247008 | c.495G>A | synonymous_variant | 0.81 |
embB | 4249012 | c.2499G>A | synonymous_variant | 0.82 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |