Run ID: SRR6785385
Sample name:
Date: 04-04-2023 15:51:27
Number of reads: 2894845
Percentage reads mapped: 99.73
Strain: lineage4.8
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
fgd1 | 491315 | p.Gly178Ala | missense_variant | 0.2 |
mshA | 576108 | p.Ala254Gly | missense_variant | 0.23 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
Rv1258c | 1407062 | c.279G>A | synonymous_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1473980 | n.323A>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475839 | n.2182T>A | non_coding_transcript_exon_variant | 0.33 |
fabG1 | 1673380 | c.-60C>G | upstream_gene_variant | 0.15 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2170048 | p.Leu189Val | missense_variant | 0.2 |
PPE35 | 2170053 | p.Thr187Ser | missense_variant | 0.2 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
folC | 2747750 | c.-152G>A | upstream_gene_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243331 | c.99G>T | synonymous_variant | 1.0 |
embB | 4246544 | p.Thr11Pro | missense_variant | 0.14 |
embB | 4246548 | p.Pro12Gln | missense_variant | 0.14 |
embB | 4246555 | c.42G>C | synonymous_variant | 0.15 |
embB | 4246556 | p.Ala15Pro | missense_variant | 0.15 |
aftB | 4268619 | p.Val73Gly | missense_variant | 0.19 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4408059 | p.His48Gln | missense_variant | 1.0 |
Rv3083 | 3448507 | c.5_*1408del | frameshift_variant&stop_lost&splice_region_variant | 1.0 |