Run ID: SRR6785510
Sample name:
Date: 04-04-2023 16:01:04
Number of reads: 1223363
Percentage reads mapped: 99.79
Strain: lineage4.8
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 6592 | c.-710C>A | upstream_gene_variant | 0.17 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
rpoC | 765416 | p.Phe683Val | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1303747 | p.Thr273Ala | missense_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472249 | n.404T>G | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474017 | n.360A>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1474763 | n.1106G>T | non_coding_transcript_exon_variant | 0.33 |
fabG1 | 1673346 | c.-94C>G | upstream_gene_variant | 0.11 |
fabG1 | 1673349 | c.-91G>C | upstream_gene_variant | 0.12 |
fabG1 | 1673357 | c.-83G>A | upstream_gene_variant | 0.13 |
fabG1 | 1673359 | c.-81T>C | upstream_gene_variant | 0.13 |
fabG1 | 1673361 | c.-79C>G | upstream_gene_variant | 0.13 |
fabG1 | 1673380 | c.-60C>G | upstream_gene_variant | 0.12 |
fabG1 | 1673560 | p.Lys41Leu | missense_variant | 0.14 |
fabG1 | 1673642 | p.Val68Gly | missense_variant | 0.5 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154970 | p.Asp381Ala | missense_variant | 0.33 |
PPE35 | 2170425 | p.Val63Gly | missense_variant | 0.19 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
Rv3083 | 3448497 | c.-7T>A | upstream_gene_variant | 1.0 |
clpC1 | 4040042 | c.663C>T | synonymous_variant | 1.0 |
embC | 4242485 | p.Glu875Gln | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
aftB | 4268619 | p.Val73Gly | missense_variant | 0.29 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
Rv3083 | 3448443 | c.-60_*1408del | transcript_ablation | 1.0 |