Run ID: SRR6831838
Sample name:
Date: 04-04-2023 17:04:10
Number of reads: 673685
Percentage reads mapped: 99.55
Strain: lineage2.2.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage2 | East-Asian | Beijing | RD105 | 1.0 |
lineage2.2 | East-Asian (Beijing) | Beijing-RD207 | RD105;RD207 | 1.0 |
lineage2.2.1 | East-Asian (Beijing) | Beijing-RD181 | RD105;RD207;RD181 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8167 | p.Glu289Gly | missense_variant | 0.11 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
mshA | 575907 | p.Ala187Val | missense_variant | 1.0 |
ccsA | 620322 | c.432G>A | synonymous_variant | 0.14 |
ccsA | 620625 | p.Ile245Met | missense_variant | 1.0 |
rpoB | 759895 | p.Pro30Arg | missense_variant | 0.2 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
rpoC | 764039 | p.Ser224Gly | missense_variant | 0.2 |
rpoC | 764802 | p.Arg478His | missense_variant | 0.13 |
rpoC | 766645 | p.Glu1092Asp | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpL5 | 776182 | p.Asp767Asn | missense_variant | 1.0 |
mmpL5 | 777193 | p.Gly430Arg | missense_variant | 0.22 |
mmpL5 | 778003 | c.477delG | frameshift_variant | 0.2 |
mmpS5 | 779615 | c.-710C>G | upstream_gene_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rplC | 801028 | p.Gly74Ser | missense_variant | 0.29 |
Rv1258c | 1406760 | c.580_581insC | frameshift_variant | 1.0 |
Rv1258c | 1407215 | c.126G>A | synonymous_variant | 0.29 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1475047 | n.1390G>A | non_coding_transcript_exon_variant | 0.2 |
rrl | 1475360 | n.1703G>T | non_coding_transcript_exon_variant | 0.12 |
inhA | 1674492 | c.291C>T | synonymous_variant | 1.0 |
rpsA | 1834177 | c.636A>C | synonymous_variant | 1.0 |
rpsA | 1834476 | p.Arg312Leu | missense_variant | 0.11 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2102185 | c.857dupG | frameshift_variant | 0.12 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
Rv1979c | 2222978 | p.Ile63Val | missense_variant | 0.4 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
eis | 2715464 | c.-132G>A | upstream_gene_variant | 0.14 |
eis | 2715525 | c.-193G>T | upstream_gene_variant | 0.11 |
Rv2752c | 3065891 | p.Pro101Ala | missense_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
Rv3083 | 3448423 | c.-81C>A | upstream_gene_variant | 0.17 |
Rv3083 | 3449607 | c.1104G>A | synonymous_variant | 0.4 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
whiB7 | 3568825 | c.-146A>G | upstream_gene_variant | 0.25 |
Rv3236c | 3612323 | p.Pro265Leu | missense_variant | 0.25 |
Rv3236c | 3612813 | p.Thr102Ala | missense_variant | 1.0 |
fbiB | 3641634 | p.Ala34Ser | missense_variant | 0.15 |
fbiB | 3642047 | c.513G>C | synonymous_variant | 0.25 |
fbiB | 3642425 | c.891C>T | synonymous_variant | 0.14 |
alr | 3841535 | c.-115G>A | upstream_gene_variant | 0.15 |
rpoA | 3878403 | c.104delG | frameshift_variant | 0.18 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243460 | c.228C>T | synonymous_variant | 1.0 |
embA | 4245439 | p.Ala736Val | missense_variant | 0.33 |
aftB | 4267647 | p.Asp397Gly | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4407927 | p.Glu92Asp | missense_variant | 1.0 |