Run ID: SRR6855940
Sample name:
Date: 04-04-2023 17:50:41
Number of reads: 420781
Percentage reads mapped: 99.7
Strain: lineage4.8
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
fgd1 | 491100 | c.318C>T | synonymous_variant | 1.0 |
ccsA | 620692 | p.Ser268Pro | missense_variant | 0.12 |
rpoC | 763890 | p.Ala174Glu | missense_variant | 0.13 |
rpoC | 763980 | p.Glu204Ala | missense_variant | 0.12 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776647 | p.Val612Ile | missense_variant | 1.0 |
mmpL5 | 777925 | p.Val186Ile | missense_variant | 0.14 |
mmpR5 | 779480 | p.Asp164Gly | missense_variant | 0.14 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1302806 | c.-125C>G | upstream_gene_variant | 0.11 |
fbiC | 1302835 | c.-96C>A | upstream_gene_variant | 0.1 |
Rv1258c | 1406277 | p.Leu355Pro | missense_variant | 0.13 |
Rv1258c | 1406651 | p.Met230Ile | missense_variant | 0.12 |
Rv1258c | 1407231 | p.Arg37Pro | missense_variant | 0.11 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476002 | n.2345T>A | non_coding_transcript_exon_variant | 0.11 |
inhA | 1674197 | c.-5C>T | upstream_gene_variant | 0.14 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2102773 | c.270C>T | synonymous_variant | 0.13 |
katG | 2153896 | p.Val739Ala | missense_variant | 0.1 |
katG | 2154396 | c.1716G>T | synonymous_variant | 0.12 |
PPE35 | 2167969 | c.2632_2643delGGATTCGCAATC | conservative_inframe_deletion | 0.22 |
PPE35 | 2168524 | p.Gly697Ser | missense_variant | 1.0 |
PPE35 | 2170413 | p.Ala67Glu | missense_variant | 0.25 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289395 | c.-154C>T | upstream_gene_variant | 0.12 |
pncA | 2289459 | c.-223_-219dupACCTG | upstream_gene_variant | 0.11 |
pncA | 2289782 | c.-541A>G | upstream_gene_variant | 0.12 |
pncA | 2289846 | c.-605C>T | upstream_gene_variant | 0.18 |
kasA | 2518954 | c.840C>A | synonymous_variant | 0.11 |
eis | 2715024 | c.309A>G | synonymous_variant | 0.12 |
eis | 2715435 | c.-103C>A | upstream_gene_variant | 0.13 |
eis | 2715561 | c.-229G>C | upstream_gene_variant | 0.12 |
ahpC | 2725940 | c.-253A>G | upstream_gene_variant | 0.12 |
pepQ | 2860462 | c.-44C>G | upstream_gene_variant | 0.17 |
fprA | 3474304 | p.Val100Met | missense_variant | 0.1 |
fprA | 3475277 | p.Gln424Leu | missense_variant | 0.12 |
fbiA | 3641182 | p.Ser214Pro | missense_variant | 0.12 |
fbiB | 3641909 | c.375T>C | synonymous_variant | 0.17 |
fbiB | 3642134 | c.600G>A | synonymous_variant | 0.13 |
alr | 3840764 | c.657G>C | synonymous_variant | 1.0 |
rpoA | 3878469 | c.39C>A | synonymous_variant | 0.17 |
ddn | 3987108 | p.Tyr89His | missense_variant | 0.12 |
ddn | 3987114 | p.Asn91His | missense_variant | 0.14 |
clpC1 | 4038223 | p.Ala828Thr | missense_variant | 0.12 |
clpC1 | 4038344 | c.2360delA | frameshift_variant | 0.14 |
clpC1 | 4039332 | p.Val458Ala | missense_variant | 0.11 |
clpC1 | 4040854 | c.-150T>C | upstream_gene_variant | 0.11 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243862 | c.632_633delTG | frameshift_variant | 0.11 |
embA | 4245552 | p.Pro774Ser | missense_variant | 1.0 |
embB | 4248040 | c.1527C>T | synonymous_variant | 0.11 |
embB | 4249395 | p.Ile961Thr | missense_variant | 0.12 |
ethA | 4327181 | p.Ile98Thr | missense_variant | 0.12 |
whiB6 | 4338361 | p.Arg54Leu | missense_variant | 0.15 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
Rv3083 | 3448507 | c.5_*1408del | frameshift_variant&stop_lost&splice_region_variant | 1.0 |