Run ID: SRR6856030
Sample name:
Date: 04-04-2023 17:53:41
Number of reads: 455816
Percentage reads mapped: 99.73
Strain: lineage4.3.3
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.3 | Euro-American (LAM) | mainly-LAM | None | 1.0 |
lineage4.3.3 | Euro-American (LAM) | LAM;T | RD115 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7165 | c.-137C>T | upstream_gene_variant | 0.11 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8040 | p.Gly247Ser | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
ccsA | 619821 | c.-70T>C | upstream_gene_variant | 0.12 |
rpoC | 764995 | c.1626C>G | synonymous_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 778227 | p.Gly85Ala | missense_variant | 1.0 |
rpsL | 781385 | c.-175C>T | upstream_gene_variant | 0.12 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rpsL | 781422 | c.-138A>G | upstream_gene_variant | 0.11 |
Rv1258c | 1406839 | p.Val168Ile | missense_variant | 0.1 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1476056 | n.2399G>A | non_coding_transcript_exon_variant | 1.0 |
inhA | 1674316 | p.Thr39Ala | missense_variant | 0.11 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2168320 | p.Thr765Ala | missense_variant | 0.14 |
PPE35 | 2170048 | p.Leu189Val | missense_variant | 0.12 |
PPE35 | 2170053 | p.Thr187Ser | missense_variant | 0.12 |
Rv1979c | 2223051 | p.Glu38Asp | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518832 | p.Gly240Ser | missense_variant | 0.12 |
kasA | 2518919 | p.Gly269Ser | missense_variant | 1.0 |
ahpC | 2726237 | c.45C>G | synonymous_variant | 0.14 |
pepQ | 2859771 | p.Asp216Glu | missense_variant | 0.13 |
Rv2752c | 3065431 | p.Ala254Val | missense_variant | 1.0 |
Rv2752c | 3065824 | p.Pro123Leu | missense_variant | 1.0 |
thyA | 3073868 | p.Thr202Ala | missense_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
ald | 3087723 | p.Pro302Ser | missense_variant | 0.1 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
Rv3236c | 3612994 | p.Leu41Phe | missense_variant | 0.1 |
fbiA | 3640574 | p.Gly11Val | missense_variant | 0.12 |
clpC1 | 4038287 | c.2418C>T | synonymous_variant | 1.0 |
embC | 4240664 | p.Trp268Arg | missense_variant | 0.12 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4244950 | p.Gln573Arg | missense_variant | 0.17 |
embA | 4246162 | p.Val977Ala | missense_variant | 0.11 |
aftB | 4267698 | p.Leu380Pro | missense_variant | 0.15 |
whiB6 | 4338515 | p.Tyr3His | missense_variant | 0.12 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4408156 | p.Leu16Arg | missense_variant | 1.0 |