Run ID: SRR6896198
Sample name:
Date: 04-04-2023 17:58:32
Number of reads: 193656
Percentage reads mapped: 93.12
Strain: lineage2.2
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage2 | East-Asian | Beijing | RD105 | 1.0 |
lineage2.2 | East-Asian (Beijing) | Beijing-RD207 | RD105;RD207 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 0.15 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 0.88 |
mshA | 575907 | p.Ala187Val | missense_variant | 1.0 |
mshA | 576780 | p.Val478Ala | missense_variant | 0.25 |
ccsA | 620625 | p.Ile245Met | missense_variant | 1.0 |
rpoB | 759651 | c.-156A>G | upstream_gene_variant | 0.14 |
rpoB | 760090 | p.Gly95Glu | missense_variant | 0.2 |
rpoB | 760375 | p.Asp190Val | missense_variant | 0.2 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
rpoC | 766500 | p.Ala1044Val | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpL5 | 776182 | p.Asp767Asn | missense_variant | 1.0 |
mmpS5 | 779615 | c.-710C>G | upstream_gene_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1305270 | c.2340C>A | synonymous_variant | 0.12 |
Rv1258c | 1406760 | c.580_581insC | frameshift_variant | 1.0 |
embR | 1417484 | c.-137C>G | upstream_gene_variant | 0.25 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472556 | n.711C>A | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472558 | n.713G>A | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472569 | n.724G>A | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474249 | n.592G>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1474269 | n.612C>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1474275 | n.618T>G | non_coding_transcript_exon_variant | 0.25 |
rrl | 1474280 | n.623C>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1474281 | n.624A>G | non_coding_transcript_exon_variant | 0.25 |
rrl | 1475635 | n.1978G>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.31 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.31 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.42 |
rrl | 1476411 | n.2754G>A | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476425 | n.2768G>A | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476433 | n.2776C>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476443 | n.2786G>C | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476455 | n.2798C>G | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476463 | n.2806C>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476470 | n.2813C>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.25 |
fabG1 | 1673485 | p.Arg16Cys | missense_variant | 0.18 |
fabG1 | 1674094 | p.Gly219Arg | missense_variant | 0.22 |
rpsA | 1833749 | p.Ile70Leu | missense_variant | 1.0 |
rpsA | 1834177 | c.636A>C | synonymous_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 0.88 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
eis | 2714526 | c.805_806delAC | frameshift_variant | 1.0 |
folC | 2746441 | p.Asp386Glu | missense_variant | 0.22 |
folC | 2746544 | p.Ala352Gly | missense_variant | 0.2 |
folC | 2747784 | c.-186C>T | upstream_gene_variant | 0.22 |
Rv2752c | 3065137 | p.Ile352Asn | missense_variant | 0.25 |
Rv2752c | 3065711 | p.Gly161Ser | missense_variant | 0.88 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
Rv3083 | 3449743 | p.Ala414Ser | missense_variant | 0.14 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3475068 | c.1062A>G | synonymous_variant | 0.17 |
Rv3236c | 3612813 | p.Thr102Ala | missense_variant | 1.0 |
fbiB | 3641743 | p.Arg70Lys | missense_variant | 0.25 |
rpoA | 3877707 | p.Glu267Asp | missense_variant | 0.22 |
clpC1 | 4040412 | p.Leu98His | missense_variant | 0.2 |
panD | 4044064 | p.Gly73Val | missense_variant | 0.4 |
embC | 4239994 | c.132C>A | synonymous_variant | 0.11 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4242703 | c.-530C>A | upstream_gene_variant | 0.17 |
embA | 4242772 | c.-461G>A | upstream_gene_variant | 0.18 |
embA | 4243460 | c.228C>T | synonymous_variant | 1.0 |
embA | 4244449 | p.Ala406Asp | missense_variant | 0.33 |
aftB | 4267647 | p.Asp397Gly | missense_variant | 1.0 |
aftB | 4268527 | c.310C>A | synonymous_variant | 0.25 |
aftB | 4268808 | p.Val10Ala | missense_variant | 0.22 |
ubiA | 4268963 | p.Trp291Arg | missense_variant | 0.29 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4407927 | p.Glu92Asp | missense_variant | 1.0 |