Run ID: SRR6982439
Sample name:
Date: 04-04-2023 18:37:29
Number of reads: 538507
Percentage reads mapped: 99.63
Strain: lineage4.4.1.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.4 | Euro-American | S;T | None | 1.0 |
lineage4.4.1 | Euro-American (S-type) | S;T | None | 1.0 |
lineage4.4.1.1 | Euro-American | S;Orphans | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9138 | p.Gln613Glu | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
ccsA | 620629 | p.Gly247Arg | missense_variant | 0.2 |
rpoC | 766572 | p.Pro1068Leu | missense_variant | 0.17 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 777416 | c.1065G>T | synonymous_variant | 1.0 |
mmpR5 | 779036 | p.Ile16Thr | missense_variant | 0.12 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1304037 | c.1107G>T | synonymous_variant | 0.12 |
Rv1258c | 1407234 | p.Gln36Arg | missense_variant | 0.11 |
Rv1258c | 1407525 | c.-185C>T | upstream_gene_variant | 0.11 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
fabG1 | 1674142 | p.Ala235Thr | missense_variant | 0.12 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2102990 | p.Val18Ala | missense_variant | 1.0 |
ndh | 2103152 | c.-110G>A | upstream_gene_variant | 0.13 |
PPE35 | 2167875 | p.Gly913Asp | missense_variant | 0.11 |
PPE35 | 2168479 | p.Thr712Pro | missense_variant | 1.0 |
PPE35 | 2169840 | p.Gly258Asp | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
folC | 2746629 | p.Asp324Asn | missense_variant | 0.11 |
ribD | 2987517 | p.Ile227Leu | missense_variant | 0.17 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
Rv3083 | 3448608 | c.105G>A | synonymous_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
whiB7 | 3568779 | c.-100T>C | upstream_gene_variant | 1.0 |
whiB7 | 3568876 | c.-197G>A | upstream_gene_variant | 0.1 |
Rv3236c | 3612665 | p.Val151Ala | missense_variant | 1.0 |
clpC1 | 4038547 | p.His720Asn | missense_variant | 0.11 |
clpC1 | 4039671 | p.Val345Ala | missense_variant | 0.12 |
clpC1 | 4040357 | c.348T>C | synonymous_variant | 0.13 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243930 | p.Leu233Pro | missense_variant | 0.1 |
embA | 4246000 | p.Arg923Leu | missense_variant | 0.18 |
embB | 4246725 | p.Leu71Pro | missense_variant | 0.12 |
embB | 4247297 | p.Pro262Ser | missense_variant | 0.12 |
embB | 4249259 | p.Met916Val | missense_variant | 0.13 |
embB | 4249355 | p.Val948Leu | missense_variant | 0.11 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |