Run ID: SRR7131105
Sample name:
Date: 04-04-2023 18:45:29
Number of reads: 2071692
Percentage reads mapped: 99.99
Strain: lineage4.2.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.2 | Euro-American | H;T;LAM | None | 1.0 |
lineage4.2.1 | Euro-American (TUR) | H3;H4 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1475626 | n.1969T>C | non_coding_transcript_exon_variant | 0.2 |
rrl | 1475881 | n.2224T>C | non_coding_transcript_exon_variant | 0.1 |
rrl | 1475898 | n.2241A>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1475899 | n.2242G>A | non_coding_transcript_exon_variant | 0.12 |
rrl | 1475916 | n.2259C>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1475943 | n.2286G>A | non_coding_transcript_exon_variant | 0.1 |
rrl | 1476250 | n.2593C>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476251 | n.2594T>C | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476257 | n.2600G>C | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476293 | n.2636C>T | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476294 | n.2637A>G | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.11 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2169879 | p.Phe245Cys | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
ald | 3086742 | c.-78A>C | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fbiD | 3339652 | p.Thr179Pro | missense_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4246584 | p.Arg24Pro | missense_variant | 0.18 |
embB | 4249594 | c.3081G>A | synonymous_variant | 1.0 |
ethA | 4328376 | c.-903G>C | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |