TB-Profiler result

Run: SRR8791307
Summary

Run ID: SRR8791307

Sample name:

Date: 18-08-2022 12:23:02

Number of reads: 529689

Percentage reads mapped: 99.27

Strain:

Drug-resistance: RR-TB

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rpoB 761155 p.Ser450Leu missense_variant 1.0 rifampicin
pncA 2288955 p.Lys96Arg missense_variant 0.88 pyrazinamide
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
pncA 2289151 p.Ile31Leu missense_variant 0.17