TB-Profiler result

Run: SRR9940952
Summary

Run ID: SRR9940952

Sample name:

Date: 04-04-2023 23:00:26

Number of reads: 1057303

Percentage reads mapped: 99.59

Strain: lineage4.9

Drug-resistance: Sensitive

Download CSV Download TXT Download PDF Download JSON
Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
mshA 576751 p.Lys468Asn missense_variant 0.3
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrl 1475084 n.1427G>A non_coding_transcript_exon_variant 0.15
rrl 1475997 n.2340A>G non_coding_transcript_exon_variant 0.13
rrl 1476618 n.2961C>T non_coding_transcript_exon_variant 0.12
rpsA 1834520 p.Ala327Ser missense_variant 0.15
PPE35 2170598 c.15G>A synonymous_variant 1.0
Rv3083 3449286 p.Trp261* stop_gained 0.87
ethA 4327269 p.Trp69Arg missense_variant 1.0