Run ID: SRR998664
Sample name:
Date: 04-04-2023 23:30:31
Number of reads: 1067754
Percentage reads mapped: 96.25
Strain: lineage4.1.3
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 1.0 |
lineage4.1.3 | Euro-American | T;X;H | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 490751 | c.-32T>G | upstream_gene_variant | 0.5 |
ccsA | 620740 | p.Thr284Ala | missense_variant | 0.1 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 779472 | c.-992G>T | upstream_gene_variant | 0.11 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rpsL | 781421 | c.-139C>A | upstream_gene_variant | 1.0 |
fbiC | 1304610 | c.1680C>T | synonymous_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1475363 | n.1706C>A | non_coding_transcript_exon_variant | 0.29 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2169874 | p.Ile247Val | missense_variant | 0.11 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
eis | 2715172 | p.Pro54Gln | missense_variant | 0.18 |
eis | 2715508 | c.-191_-177delTGCCGGAGCCGTCGG | upstream_gene_variant | 0.2 |
pepQ | 2860350 | c.69G>T | synonymous_variant | 0.14 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fbiB | 3642147 | p.Val205Ile | missense_variant | 0.5 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
ubiA | 4270019 | c.-186A>G | upstream_gene_variant | 0.12 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |