EBG00000313325 - n.1402C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
0 Sensitive
3 RR-TB
0 HR-TB
64 MDR-TB
66 Pre-XDR-TB
3 XDR-TB
4 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 61 |
| lineage4.9 | 7 |
| lineage4.8 | 29 |
| lineage4.3.3 | 15 |
| lineage4.3.1 | 1 |
| 1 | |
| lineage4.1.2 | 3 |
| lineage2.2.2 | 9 |
| lineage4.2.2.2 | 2 |
| lineage4.1.2.1 | 3 |
| La3;M.canetti;lineage2.2.1 | 1 |
| lineage2.2.1;lineage4.2.1 | 1 |
| lineage1.2.2.2 | 2 |
| lineage4.1.1.3 | 2 |
| lineage2.1 | 1 |
| lineage1.1.2;lineage4 | 1 |
| lineage4.1.4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 140 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4822347 | RR-TB | lineage2.2.1 | None | DRR130118 | Pre-XDR-TB | lineage4.9 | None | ERR13254202 | Pre-XDR-TB | lineage4.9 | None | ERR13290694 | Pre-XDR-TB | lineage2.2.1 | None | SRR28351268 | Pre-XDR-TB | lineage2.2.1 | None | SRR28119754 | MDR-TB | lineage2.2.1 | None | ERR4830480 | MDR-TB | lineage4.8 | za | ERR7911073 | Pre-XDR-TB | lineage4.3.3 | za | ERR8665878 | MDR-TB | lineage4.3.3 | None | ERR4829671 | MDR-TB | lineage4.3.1 | it | ERR1465842 | MDR-TB | lineage4.8 | None | ERR4553882 | RR-TB | None | ERR2510683 | Pre-XDR-TB | lineage4.1.2 | it | SAMEA2533433 | MDR-TB | lineage2.2.1 | uz | SAMEA2533615 | MDR-TB | lineage2.2.1 | uz | SAMEA2533723 | MDR-TB | lineage4.8 | uz | ERR552274 | MDR-TB | lineage2.2.1 | uz | SAMEA2534652 | MDR-TB | lineage4.8 | uz | SRR5266555 | MDR-TB | lineage4.3.3 | ru | SRR7341638 | MDR-TB | lineage4.8 | ro | ERR067679 | MDR-TB | lineage4.3.3 | ru | SRR1710076 | Pre-XDR-TB | lineage2.2.2 | cn | ERR2516266 | MDR-TB | lineage4.3.3 | be | ERR2515333 | Pre-XDR-TB | lineage2.2.1 | za | SRR3742668 | Pre-XDR-TB | lineage2.2.1 | None | SRR1368333 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341254 | Other | lineage4.2.2.2 | in | ERR11488357 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR5864893 | Pre-XDR-TB | lineage4.8 | None | ERR13292577 | MDR-TB | lineage4.3.3 | None | ERR13276316 | MDR-TB | lineage2.2.1 | None | ERR10748258 | Pre-XDR-TB | lineage2.2.2 | None | ERR552443_ERR552442 | MDR-TB | lineage4.8 | None | SRR15723024 | Pre-XDR-TB | lineage2.2.2 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | SRR13180207 | MDR-TB | lineage4.3.3 | None | ERR4822359 | Pre-XDR-TB | lineage4.9 | None | ERR552443 | MDR-TB | lineage4.8 | None | ERR11080997 | MDR-TB | lineage4.3.3 | None | DRR130140 | MDR-TB | lineage2.2.1 | None | ERR5864892 | Pre-XDR-TB | lineage4.8 | None | ERR550736 | MDR-TB | lineage2.2.1 | None | SRR29539545 | MDR-TB | lineage2.2.1 | None | SRR6356937 | Pre-XDR-TB | lineage2.2.1 | None | ERR550736_ERR550735 | MDR-TB | lineage2.2.1 | None | ERR11081612 | MDR-TB | lineage2.2.1 | None | SRR13870387 | Pre-XDR-TB | lineage4.3.3 | None | SRR16088263 | MDR-TB | lineage2.2.1 | None | ERR234583 | MDR-TB | lineage2.2.1;lineage4.2.1 | ru | ERR2600593 | MDR-TB | lineage2.2.1 | None | ERR551131_ERR551130 | MDR-TB | lineage4.8 | None | ERR11798553 | Pre-XDR-TB | lineage2.2.1 | None | ERR13285822 | MDR-TB | lineage2.2.1 | None | ERR550988_ERR550989_ERR550990 | MDR-TB | lineage2.2.1 | None | SRR7516327 | MDR-TB | lineage2.2.1 | None | SRR29017647 | Pre-XDR-TB | lineage1.2.2.2 | None | SRR10315476 | MDR-TB | lineage4.8 | None | SRR1367226 | Pre-XDR-TB | lineage2.2.1 | None | SRR29094084 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR10315475 | MDR-TB | lineage4.8 | None | DRR130119 | RR-TB | lineage2.2.1 | None | ERR552206 | MDR-TB | lineage2.2.1 | None | SRR3742655 | Pre-XDR-TB | lineage2.2.1 | None | ERR13258444 | MDR-TB | lineage2.2.1 | None | SRR15723011 | Pre-XDR-TB | lineage2.2.2 | None | ERR13284850 | MDR-TB | lineage2.2.1 | None | ERR13291114 | XDR-TB | lineage2.1 | None | ERR5864900 | Pre-XDR-TB | lineage4.8 | None | ERR5987411 | Pre-XDR-TB | lineage4.3.3 | None | SRR7652971 | MDR-TB | lineage2.2.1 | None | ERR8665712 | Pre-XDR-TB | lineage2.2.1 | None | SRR1367219 | Pre-XDR-TB | lineage2.2.1 | None | SRR1368336 | Pre-XDR-TB | lineage2.2.1 | None | ERR1465842_ERR1465967 | MDR-TB | lineage4.8 | None | ERR5866470 | Other | lineage2.2.1 | None | ERR13284450 | MDR-TB | lineage4.3.3 | None | ERR4822351 | MDR-TB | lineage2.2.1 | None | SRR1368334 | Pre-XDR-TB | lineage2.2.1 | None | ERR8665713 | Pre-XDR-TB | lineage2.2.1 | None | SRR671824 | Pre-XDR-TB | lineage2.2.2 | cn | ERR11488930 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR28393595 | MDR-TB | lineage2.2.1 | None | ERR4831002 | Pre-XDR-TB | lineage4.2.2.2 | np | ERR4827691 | MDR-TB | lineage2.2.1 | None | ERR4830684 | Pre-XDR-TB | lineage4.3.3 | dz | ERR7911033 | MDR-TB | lineage2.2.1 | md | ERR11081709 | MDR-TB | lineage2.2.1 | None | ERR8975519 | Pre-XDR-TB | lineage2.2.2 | None | SRR18593216 | Pre-XDR-TB | lineage1.1.2;lineage4 | None | SRR5152927 | Pre-XDR-TB | lineage4.8 | None | SAMEA4041329 | MDR-TB | lineage4.8 | None | ERR1873448 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR2516434 | MDR-TB | lineage4.1.4 | pe | ERR550735 | MDR-TB | lineage2.2.1 | None | SRR28351311 | Pre-XDR-TB | lineage2.2.1 | None | ERR9119877 | Pre-XDR-TB | lineage4.3.3 | None | SRR1367221 | Pre-XDR-TB | lineage2.2.1 | None | SRR21776294 | MDR-TB | lineage4.3.3 | None | SRR9971337 | MDR-TB | lineage4.8 | None | ERR2307415 | MDR-TB | lineage2.2.1 | None | ERR4828807 | Pre-XDR-TB | lineage4.1.2 | None | SRR1368335 | Pre-XDR-TB | lineage2.2.1 | None | ERR552442 | MDR-TB | lineage4.8 | None | ERR11082132 | MDR-TB | lineage2.2.1 | None | ERR5866472 | MDR-TB | lineage2.2.1 | None | SRR1367225 | Pre-XDR-TB | lineage2.2.1 | None | SRR1368332 | Pre-XDR-TB | lineage2.2.1 | None | ERR8025588 | Pre-XDR-TB | lineage2.2.2 | None | ERR1465967 | MDR-TB | lineage4.8 | None | ERR5864901 | Pre-XDR-TB | lineage4.8 | None | ERR10762287 | MDR-TB | lineage2.2.1 | None | ERR551130 | MDR-TB | lineage4.8 | None | SRR3742670 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864891 | XDR-TB | lineage4.8 | None | SRR23861909 | Pre-XDR-TB | lineage4.8 | None | ERR10762363 | MDR-TB | lineage4.3.3 | None | SRR3742669 | Pre-XDR-TB | lineage2.2.1 | None | ERR4796352 | Other | lineage4.8 | None | ERR13288789 | Pre-XDR-TB | lineage2.2.2 | None | ERR13291004 | Pre-XDR-TB | lineage2.2.1 | None | SRR29017060 | XDR-TB | lineage1.2.2.2 | None | ERR5865923 | MDR-TB | lineage2.2.1 | None | ERR11488912 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR5864898 | Pre-XDR-TB | lineage4.8 | None | SRR3742656 | Pre-XDR-TB | lineage2.2.1 | None | ERR551131 | MDR-TB | lineage4.8 | None | ERR13266531 | Pre-XDR-TB | lineage2.2.1 | None | ERR13276318 | MDR-TB | lineage2.2.1 | None | ERR5864897 | Pre-XDR-TB | lineage4.8 | None | ERR5864899 | Pre-XDR-TB | lineage4.8 | None | SRR20139557 | MDR-TB | lineage4.8 | None | SRR24256255 | Pre-XDR-TB | lineage2.2.1 | None | SRR6485120 | MDR-TB | lineage2.2.1 | None | SRR11567806 | Pre-XDR-TB | lineage2.2.1 | None | SRR7829587 | Pre-XDR-TB | lineage4.1.2 | None | SRR28339292 | Pre-XDR-TB | lineage4.9 | None | SRR21159786 | Other | lineage4.9 | None | DRR130242 | MDR-TB | lineage4.9 | None | SRR28339291 | Pre-XDR-TB | lineage4.9 | None | SRR15723125 | Pre-XDR-TB | lineage2.2.2 | None |
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