EBG00000313325 - n.513C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
0 Sensitive
3 RR-TB
14 HR-TB
71 MDR-TB
9 Pre-XDR-TB
0 XDR-TB
1 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.6.2.2 | 2 |
| lineage3.1.3 | 1 |
| lineage4.8 | 1 |
| lineage1.2.2.2 | 7 |
| lineage2.2.1 | 18 |
| lineage3.1.2 | 1 |
| lineage1.1.2 | 5 |
| lineage4.3.4.2.1 | 12 |
| lineage4.3.4.2 | 13 |
| lineage4.1.1 | 14 |
| lineage4.6.1.2 | 3 |
| lineage3 | 1 |
| lineage4.1.2.1 | 6 |
| lineage4.4.1.1 | 2 |
| lineage4.7 | 1 |
| lineage4.9 | 3 |
| 1 | |
| lineage4.1.1;lineage4.1.2.1;lineage4.3.4.2 | 1 |
| lineage4.3.1 | 2 |
| lineage1.1.3.2;lineage4.3.4.2.1 | 1 |
| lineage4.7;lineage4.8 | 1 |
| lineage1.1.3.3 | 1 |
| lineage4.3.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 98 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR9119470 | MDR-TB | lineage4.6.2.2 | None | SRR1172895 | Pre-XDR-TB | lineage3.1.3 | None | SRR29274175 | Pre-XDR-TB | lineage4.8 | None | SRR29441108 | HR-TB | lineage1.2.2.2 | None | ERR13290547 | MDR-TB | lineage2.2.1 | None | SRR29772711 | MDR-TB | lineage3.1.2 | None | DRR130207 | Pre-XDR-TB | lineage2.2.1 | None | ERR181907 | HR-TB | lineage1.1.2 | mw | ERR212088 | HR-TB | lineage1.1.2 | mw | ERR212008 | HR-TB | lineage4.3.4.2.1 | mw | ERR13290548 | MDR-TB | lineage2.2.1 | None | SRR12420433 | MDR-TB | lineage2.2.1 | None | ERR8773904 | MDR-TB | lineage4.3.4.2 | None | ERR1063848 | MDR-TB | lineage4.3.4.2.1 | None | SRR28394050 | MDR-TB | lineage4.1.1 | None | ERR4831843 | MDR-TB | lineage2.2.1 | vn | SRR28394179 | MDR-TB | lineage4.1.1 | None | SAMEA2533994 | MDR-TB | lineage4.3.4.2 | None | ERR1193877 | MDR-TB | lineage4.3.4.2 | sl | ERR037486 | MDR-TB | lineage4.3.4.2.1 | mw | ERR1199111 | MDR-TB | lineage4.6.1.2 | cd | SRR5341321 | Pre-XDR-TB | lineage3 | in | ERR036188 | MDR-TB | lineage4.3.4.2.1 | mw | ERR221616 | MDR-TB | lineage4.3.4.2.1 | mw | ERR221617 | MDR-TB | lineage4.3.4.2.1 | mw | ERR221618 | MDR-TB | lineage4.3.4.2.1 | mw | ERR4813123 | Pre-XDR-TB | lineage4.1.1 | None | SRR28394037 | Pre-XDR-TB | lineage4.1.1 | None | ERR4553597 | MDR-TB | lineage1.2.2.2 | None | ERR551512_ERR551513_ERR551511 | MDR-TB | lineage4.3.4.2 | None | ERR10680028 | RR-TB | lineage4.1.2.1 | None | ERR10680219 | RR-TB | lineage4.1.2.1 | None | ERR6866906 | HR-TB | lineage4.1.2.1 | None | ERR10680192 | MDR-TB | lineage4.3.4.2 | None | SRR1167134 | MDR-TB | lineage2.2.1 | None | ERR13290546 | MDR-TB | lineage2.2.1 | None | SRR1166819 | MDR-TB | lineage2.2.1 | None | SRR29231736 | MDR-TB | lineage4.4.1.1 | None | ERR551513 | MDR-TB | lineage4.3.4.2 | None | ERR7339135 | MDR-TB | lineage2.2.1 | None | SRR29231542 | MDR-TB | lineage4.6.1.2 | None | ERR6358850 | MDR-TB | lineage4.7 | None | SRR23071987 | Other | lineage4.9 | None | SRR1165499 | MDR-TB | lineage2.2.1 | None | SRR28393310 | MDR-TB | lineage4.1.1 | None | SRR28393580 | MDR-TB | lineage4.1.1 | None | SRR28394261 | MDR-TB | lineage4.1.1 | None | ERR4553413 | MDR-TB | None | ERR779849 | HR-TB | lineage4.1.2.1 | pe | SRR28393663 | MDR-TB | lineage4.1.1;lineage4.1.2.1;lineage4.3.4.2 | None | ERR2706948 | MDR-TB | lineage4.6.1.2 | cd | ERR2707112 | MDR-TB | lineage4.4.1.1 | cd | ERR4829923 | HR-TB | lineage4.3.1 | it | SRR26400062 | MDR-TB | lineage2.2.1 | None | ERR552979 | MDR-TB | lineage4.3.4.2 | None | ERR2510142 | HR-TB | lineage4.1.2.1 | pe | ERR7821118 | HR-TB | lineage1.2.2.2 | None | SRR28393357 | MDR-TB | lineage4.1.1 | None | ERR176616 | MDR-TB | lineage1.1.3.2;lineage4.3.4.2.1 | mw | ERR10680006 | MDR-TB | lineage4.3.4.2 | None | ERR13290549 | MDR-TB | lineage2.2.1 | None | ERR11488435 | MDR-TB | lineage1.2.2.2 | None | ERR10680033 | RR-TB | lineage4.1.2.1 | None | ERR551511 | MDR-TB | lineage4.3.4.2 | None | ERR2660428 | HR-TB | lineage1.2.2.2 | None | ERR10680037 | MDR-TB | lineage4.3.4.2 | None | SRR28393693 | MDR-TB | lineage2.2.1 | None | SRR29017681 | MDR-TB | lineage1.2.2.2 | None | ERR551512 | MDR-TB | lineage4.3.4.2 | None | SRR29772405 | MDR-TB | lineage1.1.2 | None | SRR21798451 | Pre-XDR-TB | lineage4.7;lineage4.8 | None | SRR28394138 | MDR-TB | lineage4.1.1 | None | ERR4872062 | MDR-TB | lineage4.6.2.2 | None | ERR163958 | MDR-TB | lineage4.3.4.2.1 | mw | SRR29017278 | MDR-TB | lineage1.2.2.2 | None | SRR28394069 | MDR-TB | lineage4.1.1 | None | ERR2707175 | MDR-TB | lineage4.9 | cd | SAMN02414950 | MDR-TB | lineage2.2.1 | se | SRR29231834 | MDR-TB | lineage4.9 | None | SRR28394204 | MDR-TB | lineage4.1.1 | None | ERR2516724 | MDR-TB | lineage4.1.1 | pe | ERR2516644 | MDR-TB | lineage2.2.1 | pe | ERR2516733 | MDR-TB | lineage2.2.1 | pe | ERR2516499 | Pre-XDR-TB | lineage4.1.1 | pe | ERR2516713 | MDR-TB | lineage4.1.1 | pe | ERR4821182 | HR-TB | lineage1.1.3.3 | gb | ERR176629 | MDR-TB | lineage4.3.4.2.1 | mw | ERR181861 | MDR-TB | lineage4.3.4.2.1 | mw | ERR190365 | HR-TB | lineage1.1.2 | mw | ERR190370 | MDR-TB | lineage4.3.4.2.1 | mw | ERR212105 | HR-TB | lineage1.1.2 | mw | SRR6485007 | Pre-XDR-TB | lineage4.3.3 | None | ERR13264909 | HR-TB | lineage4.3.1 | None | ERR181986 | MDR-TB | lineage4.3.4.2.1 | mw | ERR10680026 | MDR-TB | lineage4.3.4.2 | None | ERR4827583 | MDR-TB | lineage2.2.1 | None | SRR1162842 | MDR-TB | lineage2.2.1 | None | ERR10680065 | MDR-TB | lineage4.3.4.2 | None |
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